An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants

被引:310
作者
Smith, Stephen A. [1 ]
Beaulieu, Jeremy M. [2 ]
Donoghue, Michael J. [2 ]
机构
[1] Natl Evolutionary Synth Ctr, Durham, NC 27705 USA
[2] Yale Univ, Dept Ecol & Evolutionary Biol, New Haven, CT 06520 USA
基金
美国国家科学基金会;
关键词
divergence times; rates of molecular evolution; angiosperms; eudicots; land plants; ESTIMATING DIVERGENCE TIMES; CORRELATED EVOLUTION; CONFIDENCE-INTERVALS; MOLECULAR EVOLUTION; LIFE-HISTORY; ANGIOSPERMS; DIVERSIFICATION; AGE; PHYLOGENY; GENES;
D O I
10.1073/pnas.1001225107
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We present molecular dating analyses for land plants that incorporate 33 fossil calibrations, permit rates of molecular evolution to be uncorrelated across the tree, and take into account uncertainties in phylogenetic relationships and the fossil record. We attached a prior probability to each fossil-based minimum age, and explored the effects of relying on the first appearance of tricolpate pollen grains as a lower bound for the age of eudicots. Many of our divergence-time estimates for major clades coincide well with both the known fossil record and with previous estimates. However, our estimates for the origin of crown-clade angiosperms, which center on the Late Triassic, are considerably older than the unequivocal fossil record of flowering plants or than the molecular dates presented in recent studies. Nevertheless, we argue that our older estimates should be taken into account in studying the causes and consequences of the angiosperm radiation in relation to other major events, including the diversification of holometabolous insects. Although the methods used here do help to correct for lineage-specific heterogeneity in rates of molecular evolution (associated, for example, with evolutionary shifts in life history), we remain concerned that some such effects (e. g., the early radiation of herbaceous clades within angiosperms) may still be biasing our inferences.
引用
收藏
页码:5897 / 5902
页数:6
相关论文
共 83 条
[1]   Dating phylogenetically basal eudicots using rbcL sequences and multiple fossil reference points [J].
Anderson, CL ;
Bremer, K ;
Friis, EM .
AMERICAN JOURNAL OF BOTANY, 2005, 92 (10) :1737-1748
[2]   Did dinosaurs invent flowers? Dinosaur-angiosperm coevolution revisited [J].
Barrett, PM ;
Willis, KJ .
BIOLOGICAL REVIEWS, 2001, 76 (03) :411-447
[3]   Correlated evolution of genome size and seed mass [J].
Beaulieu, Jeremy M. ;
Moles, Angela T. ;
Leitch, Ilia J. ;
Bennett, Michael D. ;
Dickie, John B. ;
Knight, Charles A. .
NEW PHYTOLOGIST, 2007, 173 (02) :422-437
[4]   The age of the angiosperms: A molecular timescale without a clock [J].
Bell, CD ;
Soltis, DE ;
Soltis, PS .
EVOLUTION, 2005, 59 (06) :1245-1258
[5]   Dating the dipsacales: Comparing models, genes, and evolutionary implications [J].
Bell, CD ;
Donoghue, MJ .
AMERICAN JOURNAL OF BOTANY, 2005, 92 (02) :284-296
[6]   EXTENSIVE VARIATION IN EVOLUTIONARY RATE OF RBCL GENE-SEQUENCES AMONG SEED PLANTS [J].
BOUSQUET, J ;
STRAUSS, SH ;
DOERKSEN, AH ;
PRICE, RA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (16) :7844-7848
[7]  
Brenner Gilbert J., 1996, P91, DOI 10.1007/978-0-585-23095-5_5
[8]   Estimating divergence times in large phylogenetic trees [J].
Britton, Tom ;
Anderson, Cajsa Lisa ;
Jacquet, David ;
Lundqvist, Samuel ;
Bremer, Kare .
SYSTEMATIC BIOLOGY, 2007, 56 (05) :741-752
[9]   The modern molecular clock [J].
Bromham, L ;
Penny, D .
NATURE REVIEWS GENETICS, 2003, 4 (03) :216-224
[10]   Phylogenetic signal in nucleotide data from seed plants: Implications for resolving the seed plant tree of life [J].
Burleigh, JG ;
Mathews, S .
AMERICAN JOURNAL OF BOTANY, 2004, 91 (10) :1599-1613