Interactions of the ribosome with mRNA and tRNA

被引:34
作者
Demeshkina, Natalia [1 ,2 ]
Jenner, Lasse [1 ,3 ]
Yusupova, Gulnara [1 ,2 ]
Yusupov, Marat [1 ,2 ]
机构
[1] Inst Genet & Biol Mol & Cellulaire, Dept Biol & Genom Struct, F-67400 Illkirch Graffenstaden, France
[2] CNRS, UMR7104, F-67400 Illkirch Graffenstaden, France
[3] INSERM, U964, F-67400 Illkirch Graffenstaden, France
关键词
CRYSTAL-STRUCTURE; 70S RIBOSOME; ANGSTROM RESOLUTION; HYBRID STATE; SUBUNIT; INSIGHTS; IDENTIFICATION; TRANSLOCATION; MECHANISM;
D O I
10.1016/j.sbi.2010.03.002
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Recent collection of high-resolution crystal structures of the 70S ribosome with mRNA and tRNA substrates enhances our knowledge of protein synthesis principles. A novel network of interactions between the ribosome in the elongation state and mRNA downstream from the A codon suggests that mRNA is stabilized and aligned at the entrance to the decoding center. The X-ray studies clarify how natural modifications of tRNA are involved in the stabilization of the codon-anticodon interactions, prevention of frame-shifting and also expansion of the decoding capacity of tRNAs. In addition, the crystal structures provide the view that tRNA in the A and P sites communicate through a protein rich environment and suggest how these tRNAs are controlled through the intersubunit bridge formed by protein L31.
引用
收藏
页码:325 / 332
页数:8
相关论文
共 38 条
[11]   A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine-Dalgarno interaction [J].
Kaminishi, Tatsuya ;
Wilson, Daniel N. ;
Takemoto, Chie ;
Harms, Joerg M. ;
Kawazoe, Masahito ;
Schluenzen, Frank ;
Hanawa-Suetsugu, Kyoko ;
Shirouzu, Mikako ;
Fucini, Paola ;
Yokoyama, Shigeyuki .
STRUCTURE, 2007, 15 (03) :289-297
[12]   Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements [J].
Korostelev, Andrei ;
Trakhanov, Sergei ;
Laurberg, Martin ;
Noller, Harry F. .
CELL, 2006, 126 (06) :1065-1077
[13]   The role of 23S ribosomal RNA residue A2451 in peptide bond synthesis revealed by atomic mutagenesis [J].
Lang, Kathrin ;
Erlacher, Matthias ;
Wilson, Daniel N. ;
Micura, Ronald ;
Polacek, Norbert .
CHEMISTRY & BIOLOGY, 2008, 15 (05) :485-492
[14]   Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structures [J].
Ma, J ;
Campbell, A ;
Karlin, S .
JOURNAL OF BACTERIOLOGY, 2002, 184 (20) :5733-5745
[15]   Identification of two distinct hybrid state intermediates on the ribosome [J].
Munro, James B. ;
Altman, Roger B. ;
O'Connor, Nathan ;
Blanchard, Scott C. .
MOLECULAR CELL, 2007, 25 (04) :505-517
[16]   The role of modifications in codon discrimination by tRNALys UUU [J].
Murphy, FV ;
Ramakrishnan, V ;
Malkiewicz, A ;
Agris, PF .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2004, 11 (12) :1186-1191
[17]   Structural insights into translational fidelity [J].
Ogle, JM ;
Ramakrishnan, V .
ANNUAL REVIEW OF BIOCHEMISTRY, 2005, 74 :129-177
[18]   Selection of tRNA by the ribosome requires a transition from an open to a closed form [J].
Ogle, JM ;
Murphy, FV ;
Tarry, MJ ;
Ramakrishnan, V .
CELL, 2002, 111 (05) :721-732
[19]   Recognition of cognate transfer RNA by the 30S ribosomal subunit [J].
Ogle, JM ;
Brodersen, DE ;
Clemons, WM ;
Tarry, MJ ;
Carter, AP ;
Ramakrishnan, V .
SCIENCE, 2001, 292 (5518) :897-902
[20]   The RNA modification database: 1999 update [J].
Rozenski, J ;
Crain, PF ;
McCloskey, JA .
NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :196-197