Translocation of rodlike polymers through membrane channels

被引:38
作者
Berezhkovskii, AM
Gopich, IV
机构
[1] NIDDK, Phys Chem Lab, NIH, Bethesda, MD 20892 USA
[2] NIH, Math & Stat Comp Lab, Ctr Informat Technol, Bethesda, MD 20892 USA
关键词
D O I
10.1016/S0006-3495(03)74898-X
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
A theory of channel-facilitated transport of long rodlike macromolecules through thin membranes under the influence of a driving force of arbitrary strength is developed. Analytic expressions are derived for the translocation probability and the Laplace transform of the probability density of time that a macromolecule spends in the channel. We also derive expressions for the (conditional) probability densities of time spent in the channel by translocating and nontranslocating (returning back) macromolecules. These results are used to study how the distribution of the macromolecule lifetime in the channel depends on a polymer chain length and the driving force. It is shown that depending on the values of the parameters, the lifetime probability density may have one or two peaks. Our theory is a generalization of the theory developed by Lubensky and Nelson, who were inspired by recent experiments on driven translocation of single-stranded RNA and DNA molecules through single channels in narrow membranes.
引用
收藏
页码:787 / 793
页数:7
相关论文
共 33 条
[1]   Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules [J].
Akeson, M ;
Branton, D ;
Kasianowicz, JJ ;
Brandin, E ;
Deamer, DW .
BIOPHYSICAL JOURNAL, 1999, 77 (06) :3227-3233
[2]   POLYMER ELECTROPHORESIS ACROSS A MODEL MEMBRANE [J].
BAUMGARTNER, A ;
SKOLNICK, J .
JOURNAL OF PHYSICAL CHEMISTRY, 1994, 98 (41) :10655-10658
[3]   SPONTANEOUS TRANSLOCATION OF A POLYMER ACROSS A CURVED MEMBRANE [J].
BAUMGARTNER, A ;
SKOLNICK, J .
PHYSICAL REVIEW LETTERS, 1995, 74 (11) :2142-2145
[4]   Ion channels as molecular Coulter counters to probe metabolite transport [J].
Bezrukov, SM .
JOURNAL OF MEMBRANE BIOLOGY, 2000, 174 (01) :1-13
[5]   COUNTING POLYMERS MOVING THROUGH A SINGLE-ION CHANNEL [J].
BEZRUKOV, SM ;
VODYANOY, I ;
PARSEGIAN, VA .
NATURE, 1994, 370 (6487) :279-281
[6]   A polymer threading a membrane: Model system for a molecular pump [J].
Carl, W .
JOURNAL OF CHEMICAL PHYSICS, 1998, 108 (18) :7921-7922
[7]   Three-dimensional dynamic Monte Carlo simulations of driven polymer transport through a hole in a wall [J].
Chern, SS ;
Cárdenas, AE ;
Coalson, RD .
JOURNAL OF CHEMICAL PHYSICS, 2001, 115 (16) :7772-7782
[8]   Passive entry of a DNA molecule into a small pore [J].
de Gennes, PG .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (13) :7262-7264
[9]  
de Gennes PG, 1999, ADV POLYM SCI, V138, P91
[10]   Problems of DNA entry into a cell [J].
de Gennes, PG .
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 1999, 274 (1-2) :1-7