DFT study of structure and vibrations in low-lying spin states of five-coordinated deoxyheme model

被引:55
作者
Kozlowski, PM
Spiro, TG
Zgierski, MZ [1 ]
机构
[1] Princeton Univ, Dept Chem, Princeton, NJ 08544 USA
[2] Univ Louisville, Dept Chem, Louisville, KY 40292 USA
[3] Natl Res Council Canada, Steacie Inst Mol Sci, Ottawa, ON K1A 0R6, Canada
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2000年 / 104卷 / 45期
关键词
D O I
10.1021/jp001463u
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The results of the DFT (B3LYP) calculations of the structures and force fields of the five spin states of a model deoxyheme (C-s symmetry) are presented. It is shown that axial binding of imidazole dramatically reduces the gap between the intermediate- and high-spin states, so that energy of less than I kcal/mol is needed to push quintet states below the triplets. The calculated structures are in a good agreement with the known structures of various deoxy models of the heme,groups in myoglobin. A detailed analysis of low-frequency vibrations and their isotope shifts is given and compared with the experimental resonance Raman spectra, High-frequency CC and CN stretching modes show the observed lowering of their frequency with the increase of the core size of the molecule.
引用
收藏
页码:10659 / 10666
页数:8
相关论文
共 26 条
[1]   CONFIRMATION OF THE ASSIGNMENT OF THE IRON HISTIDINE STRETCHING MODE IN MYOGLOBIN [J].
ARGADE, PV ;
SASSAROLI, M ;
ROUSSEAU, DL ;
INUBUSHI, T ;
IKEDASAITO, M ;
LAPIDOT, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1984, 106 (22) :6593-6596
[2]  
COLLMAN J P, 1974, Proceedings of the National Academy of Sciences of the United States of America, V71, P1326, DOI 10.1073/pnas.71.4.1326
[3]  
Collman J. P., 1974, 167 NAT M AM CHEM SO
[4]   SYNTHESES OF FERROUS-PORPHYRIN COMPLEXES - HYPOTHETICAL MODEL FOR DEOXYMYOGLOBIN [J].
COLLMAN, JP ;
REED, CA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1973, 95 (06) :2048-2049
[5]   LOW-FREQUENCY VIBRATIONS IN RESONANCE RAMAN-SPECTRA OF HORSE HEART MYOGLOBIN - IRON-LIGAND AND IRON-NITROGEN VIBRATIONAL-MODES [J].
DESBOIS, A ;
LUTZ, M ;
BANERJEE, R .
BIOCHEMISTRY, 1979, 18 (08) :1510-1518
[6]   THE CRYSTAL-STRUCTURE OF HUMAN DEOXYHEMOGLOBIN AT 1.74A RESOLUTION [J].
FERMI, G ;
PERUTZ, MF ;
SHAANAN, B ;
FOURME, R .
JOURNAL OF MOLECULAR BIOLOGY, 1984, 175 (02) :159-174
[7]   ABSENCE OF HEME-LOCALIZED STRAIN IN T-STATE HEMOGLOBIN - INSENSITIVITY OF HEME-IMIDAZOLE RESONANCE RAMAN FREQUENCIES TO QUATERNARY STRUCTURE [J].
KINCAID, J ;
STEIN, P ;
SPIRO, TG .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1979, 76 (02) :549-552
[8]   ASSIGNMENT OF THE FE-NEPSILON (HIS F8) STRETCHING BAND IN THE RESONANCE RAMAN-SPECTRA OF DEOXY MYOGLOBIN [J].
KITAGAWA, T ;
NAGAI, K ;
TSUBAKI, M .
FEBS LETTERS, 1979, 104 (02) :376-378
[9]   Low-lying spin states of iron(II) porphine [J].
Kozlowski, PM ;
Spiro, TG ;
Bérces, A ;
Zgierski, MZ .
JOURNAL OF PHYSICAL CHEMISTRY B, 1998, 102 (14) :2603-2608
[10]   DFT-SQM force field for nickel porphine: Intrinsic ruffling [J].
Kozlowski, PM ;
Rush, TS ;
Jarzecki, AA ;
Zgierski, MZ ;
Chase, B ;
Piffat, C ;
Ye, BH ;
Li, XY ;
Pulay, P ;
Spiro, TG .
JOURNAL OF PHYSICAL CHEMISTRY A, 1999, 103 (10) :1357-1366