Systems medicine of inflammaging

被引:26
作者
Castellani, Gastone C. [1 ,2 ,3 ]
Menichetti, Giulia [4 ]
Garagnani, Paolo [5 ]
Bacalini, Maria Giulia [5 ]
Pirazzini, Chiara [5 ]
Franceschi, Claudio [5 ]
Collino, Sebastiano [6 ]
Sala, Claudia [4 ]
Remondini, Daniel [1 ]
Giampieri, Enrico [4 ]
Mosca, Ettore [7 ]
Bersanelli, Matteo [4 ,7 ]
Vitali, Silvia [4 ]
do Valle, Italo Faria [8 ]
Lio, Pietro [9 ]
Milanesi, Luciano [10 ]
机构
[1] Univ Bologna, Dept Phys, I-40126 Bologna, Italy
[2] Galvani Ctr Biocomplex, Davie, FL USA
[3] Brown Univ, Providence, RI 02912 USA
[4] Univ Bologna, Dept Phys, Biophys Grp, I-40126 Bologna, Italy
[5] Univ Bologna, Expt Diagnost & Specialty Med Dept, I-40126 Bologna, Italy
[6] NIHS, Bethesda, MD USA
[7] CNR, ITB, I-00185 Rome, Italy
[8] Univ Bologna, Dept Biochem & Biotechnol, I-40126 Bologna, Italy
[9] Univ Cambridge, Dept Comp Sci, Cambridge CB2 1TN, England
[10] CNR, Interdept Bioinformat Res Network Life Sci Med &, I-00185 Rome, Italy
关键词
propagation; ecological model; networks; multilayer networks; inflammation; multi-scale; SOMATIC POINT MUTATIONS; NETWORK-BASED ANALYSIS; TRANSPOSABLE ELEMENTS; CELLULAR SENESCENCE; SECRETORY PHENOTYPE; COMMUNITY STRUCTURE; COMPLEX NETWORKS; READ ALIGNMENT; GUT MICROBIOTA; SNP DETECTION;
D O I
10.1093/bib/bbv062
中图分类号
Q5 [生物化学];
学科分类号
070307 [化学生物学];
摘要
Systems Medicine (SM) can be defined as an extension of Systems Biology (SB) to Clinical-Epidemiological disciplines through a shifting paradigm, starting from a cellular, toward a patient centered framework. According to this vision, the three pillars of SM are Biomedical hypotheses, experimental data, mainly achieved by Omics technologies and tailored computational, statistical and modeling tools. The three SM pillars are highly interconnected, and their balancing is crucial. Despite the great technological progresses producing huge amount of data (Big Data) and impressive computational facilities, the Bio-Medical hypotheses are still of primary importance. A paradigmatic example of unifying Bio-Medical theory is the concept of Inflammaging. This complex phenotype is involved in a large number of pathologies and patho-physiological processes such as aging, age-related diseases and cancer, all sharing a common inflammatory pathogenesis. This Biomedical hypothesis can be mapped into an ecological perspective capable to describe by quantitative and predictive models some experimentally observed features, such as microenvironment, niche partitioning and phenotype propagation. In this article we show how this idea can be supported by computational methods useful to successfully integrate, analyze and model large data sets, combining cross-sectional and longitudinal information on clinical, environmental and omics data of healthy subjects and patients to provide new multidimensional biomarkers capable of distinguishing between different pathological conditions, e.g. healthy versus unhealthy state, physiological versus pathological aging.
引用
收藏
页码:527 / 540
页数:14
相关论文
共 134 条
[1]
Statistical mechanics of complex networks [J].
Albert, R ;
Barabási, AL .
REVIEWS OF MODERN PHYSICS, 2002, 74 (01) :47-97
[2]
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[3]
[Anonymous], 2011, UNIFIED NEUTRAL THEO
[4]
[Anonymous], IEEE XPLORE CLUSTERI
[5]
[Anonymous], ARXIV PREPR
[6]
[Anonymous], PHYS REV E
[7]
[Anonymous], ARXIV PREPR
[8]
[Anonymous], 2015, INTRO LIT CORRES TON
[9]
Systems medicine: the future of medical genomics and healthcare [J].
Auffray, Charles ;
Chen, Zhu ;
Hood, Leroy .
GENOME MEDICINE, 2009, 1
[10]
Dynamical evolution of ecosystems [J].
Azaele, Sandro ;
Pigolotti, Simone ;
Banavar, Jayanth R. ;
Maritan, Amos .
NATURE, 2006, 444 (7121) :926-928