Shared-memory parallel vector implementation of the immersed boundary method for the computation of blood flow in the beating mammalian heart

被引:72
作者
McQueen, DM
Peskin, CS
机构
[1] Courant Inst. of Math. Sciences, New York University, New York, NY 10012
基金
美国国家科学基金会;
关键词
parallel computing; shared memory; vectorization; computational fluid dynamics; heart; cardiac fluid dynamics; immersed boundary method;
D O I
10.1023/A:1007951707260
中图分类号
TP3 [计算技术、计算机技术];
学科分类号
0812 ;
摘要
This paper describes the parallel implementation of the immersed boundary method on a shared-memory machine such as the Cray C-90 computer. In this implementation, outer loops are parallelized and inner loops are vectorized. The sustained computation rates achieved are 0.258 Gflops with a single processor, 1.89 Gflops with 8 processors, and 2.50 Gflops with 16 processors. An application to the computer simulation of blood how in the heart is presented.
引用
收藏
页码:213 / 236
页数:24
相关论文
共 12 条
[1]  
GHOSK K, UNPUB
[2]  
MCQUEEN DM, 1982, AM J PHYSIOL, V242, P1095
[3]  
MCQUEEN DM, 1983, J THORAC CARDIOV SUR, V86, P126
[4]   A 3-DIMENSIONAL COMPUTATIONAL METHOD FOR BLOOD-FLOW IN THE HEART .2. CONTRACTILE FIBERS [J].
MCQUEEN, DM ;
PESKIN, CS .
JOURNAL OF COMPUTATIONAL PHYSICS, 1989, 82 (02) :289-297
[5]   COMPUTER-ASSISTED DESIGN OF BUTTERFLY BILEAFLET VALVES FOR THE MITRAL POSITION [J].
MCQUEEN, DM ;
PESKIN, CS .
SCANDINAVIAN JOURNAL OF THORACIC AND CARDIOVASCULAR SURGERY, 1985, 19 (02) :139-148
[6]  
MCQUEEN DM, 1991, Patent No. 5026391
[7]  
Peskin C. S., 1996, Case Studies in Mathematical Modeling: Ecology, Physiology, and Cell Biology, P309
[8]  
PESKIN CS, 1992, CRIT REV BIOMED ENG, V20, P451
[9]   A 3-DIMENSIONAL COMPUTATIONAL METHOD FOR BLOOD-FLOW IN THE HEART .1. IMMERSED ELASTIC FIBERS IN A VISCOUS INCOMPRESSIBLE FLUID [J].
PESKIN, CS ;
MCQUEEN, DM .
JOURNAL OF COMPUTATIONAL PHYSICS, 1989, 81 (02) :372-405
[10]   MECHANICAL EQUILIBRIUM DETERMINES THE FRACTAL FIBER ARCHITECTURE OF AORTIC HEART-VALVE LEAFLETS [J].
PESKIN, CS ;
MCQUEEN, DM .
AMERICAN JOURNAL OF PHYSIOLOGY, 1994, 266 (01) :H319-H328