Epigenomic regulation of host-microbiota interactions

被引:47
作者
Alenghat, Theresa [1 ]
Artis, David [2 ]
机构
[1] Cincinnati Childrens Hosp Med Ctr, Div Immunol, Cincinnati, OH 45229 USA
[2] Cornell Univ, Weill Cornell Med Coll, New York, NY 10022 USA
基金
美国国家卫生研究院;
关键词
CHAIN FATTY-ACIDS; INTESTINAL EPITHELIAL-CELLS; HISTONE DEACETYLASE INHIBITORS; NUCLEAR RECEPTOR COREPRESSOR; INFLAMMATORY-BOWEL-DISEASE; INNATE IMMUNE-RESPONSES; GUT MICROBIOTA; COMMENSAL-BACTERIA; T-CELLS; CHROMATIN-STRUCTURE;
D O I
10.1016/j.it.2014.09.007
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
071005 [微生物学]; 100108 [医学免疫学];
摘要
The trillions of beneficial commensal microorganisms that normally reside in the gastrointestinal tract have emerged as a critical source of environmentally-derived stimuli that can impact health and disease. However, the underlying cellular and molecular mechanisms that recognize commensal bacteria-derived signals and regulate mammalian homeostasis are just beginning to be defined. Highly coordinated epigenomic modifications allow mammals to alter the transcriptional program of a cell in response to environmental cues. These modifications may play a key role in regulating the dynamic relationship between mammals and their microbiota. We review recent advances in understanding the interplay between the microbiota and mammalian epigenomic pathways, and highlight emerging findings that implicate a central role for histone deacetylases (HDACs) in orchestrating host microbiota interactions.
引用
收藏
页码:518 / 525
页数:8
相关论文
共 93 条
[1]
Histone deacetylase 3 coordinates commensal-bacteria-dependent intestinal homeostasis [J].
Alenghat, Theresa ;
Osborne, Lisa C. ;
Saenz, Steven A. ;
Kobuley, Dmytro ;
Ziegler, Carly G. K. ;
Mullican, Shannon E. ;
Choi, Inchan ;
Grunberg, Stephanie ;
Sinha, Rohini ;
Wynosky-Dolfi, Meghan ;
Snyder, Annelise ;
Giacomin, Paul R. ;
Joyce, Karen L. ;
Hoang, Tram B. ;
Bewtra, Meenakshi ;
Brodsky, Igor E. ;
Sonnenberg, Gregory F. ;
Bushman, Frederic D. ;
Won, Kyoung-Jae ;
Lazar, Mitchell A. ;
Artis, David .
NATURE, 2013, 504 (7478) :153-+
[2]
Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation [J].
Arpaia, Nicholas ;
Campbell, Clarissa ;
Fan, Xiying ;
Dikiy, Stanislav ;
van der Veeken, Joris ;
deRoos, Paul ;
Liu, Hui ;
Cross, Justin R. ;
Pfeffer, Klaus ;
Coffer, Paul J. ;
Rudensky, Alexander Y. .
NATURE, 2013, 504 (7480) :451-+
[3]
Epigenetic protein families: a new frontier for drug discovery [J].
Arrowsmith, Cheryl H. ;
Bountra, Chas ;
Fish, Paul V. ;
Lee, Kevin ;
Schapira, Matthieu .
NATURE REVIEWS DRUG DISCOVERY, 2012, 11 (05) :384-400
[4]
Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota [J].
Arthur, Janelle C. ;
Perez-Chanona, Ernesto ;
Muehlbauer, Marcus ;
Tomkovich, Sarah ;
Uronis, Joshua M. ;
Fan, Ting-Jia ;
Campbell, Barry J. ;
Abujamel, Turki ;
Dogan, Belgin ;
Rogers, Arlin B. ;
Rhodes, Jonathan M. ;
Stintzi, Alain ;
Simpson, Kenneth W. ;
Hansen, Jonathan J. ;
Keku, Temitope O. ;
Fodor, Anthony A. ;
Jobin, Christian .
SCIENCE, 2012, 338 (6103) :120-123
[5]
Epithelial-cell recognition of commensal bacteria and maintenance of immune homeostasis in the gut [J].
Artis, David .
NATURE REVIEWS IMMUNOLOGY, 2008, 8 (06) :411-420
[6]
Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species [J].
Atarashi, Koji ;
Tanoue, Takeshi ;
Shima, Tatsuichiro ;
Imaoka, Akemi ;
Kuwahara, Tomomi ;
Momose, Yoshika ;
Cheng, Genhong ;
Yamasaki, Sho ;
Saito, Takashi ;
Ohba, Yusuke ;
Taniguchi, Tadatsugu ;
Takeda, Kiyoshi ;
Hori, Shohei ;
Ivanov, Ivaylo I. ;
Umesaki, Yoshinori ;
Itoh, Kikuji ;
Honda, Kenya .
SCIENCE, 2011, 331 (6015) :337-341
[7]
Epigenetic regulation of asthma and allergic disease [J].
Begin, Philippe ;
Nadeau, Kari C. .
ALLERGY ASTHMA AND CLINICAL IMMUNOLOGY, 2014, 10
[8]
Histone Deacetylases 6 and 9 and Sirtuin-1 Control Foxp3+ Regulatory T Cell Function Through Shared and Isoform-Specific Mechanisms [J].
Beier, Ulf H. ;
Wang, Liqing ;
Han, Rongxiang ;
Akimova, Tatiana ;
Liu, Yujie ;
Hancock, Wayne W. .
SCIENCE SIGNALING, 2012, 5 (229)
[9]
Butyrate increases IL-23 production by stimulated dendritic cells [J].
Berndt, Bradford E. ;
Zhang, Min ;
Owyang, Stephanie Y. ;
Cole, Tyler S. ;
Wang, Teresa W. ;
Luther, Jay ;
Veniaminova, Natalia A. ;
Merchant, Juanita L. ;
Chen, Chun-Chia ;
Huffnagle, Gary B. ;
Kao, John Y. .
AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY, 2012, 303 (12) :G1384-G1392
[10]
Epigenetics and Bacterial Infections [J].
Bierne, Helene ;
Hamon, Melanie ;
Cossart, Pascale .
COLD SPRING HARBOR PERSPECTIVES IN MEDICINE, 2012, 2 (12)