The crystal structure of Dps, a ferritin homolog that binds and protects DNA

被引:433
作者
Grant, RA
Filman, DJ
Finkel, SE
Kolter, R
Hogle, JM [1 ]
机构
[1] Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
[2] Harvard Univ, Sch Med, Dept Microbiol & Mol Genet, Boston, MA 02115 USA
[3] Harvard Univ, Comm Higher Degrees Biophys, Boston, MA 02115 USA
关键词
D O I
10.1038/nsb0498-294
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The crystal structure of Dps, a DNA-binding protein from starved E. coli that protects DNA from oxidative damage, has been solved at 1.6 Angstrom resolution, The Dps monomer has essentially the same fold as ferritin, which forms a 24-mer with 432 symmetry, a hollow core and pores at the three-fold axes, Dps forms a dodecamer with 23 (tetrahedral) point group symmetry which also has a hollow core and pores at the three-folds, The structure suggests a novel DNA-binding motif and a mechanism for DNA protection based on the sequestration of Fe ions.
引用
收藏
页码:294 / 303
页数:10
相关论文
共 39 条
[1]   A NOVEL DNA-BINDING PROTEIN WITH REGULATORY AND PROTECTIVE ROLES IN STARVED ESCHERICHIA-COLI [J].
ALMIRON, M ;
LINK, AJ ;
FURLONG, D ;
KOLTER, R .
GENES & DEVELOPMENT, 1992, 6 (12B) :2646-2654
[2]   THE DPS PROMOTER IS ACTIVATED BY OXYR DURING GROWTH AND BY IHF AND A SIGMA(S) IN STATIONARY-PHASE [J].
ALTUVIA, S ;
ALMIRON, M ;
HUISMAN, G ;
KOLTER, R ;
STORZ, G .
MOLECULAR MICROBIOLOGY, 1994, 13 (02) :265-272
[3]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[4]   ELECTRON-DENSITY MAP OF APOFERRITIN AT 2.8-A RESOLUTION [J].
BANYARD, SH ;
STAMMERS, DK ;
HARRISON, PM .
NATURE, 1978, 271 (5642) :282-284
[5]   A novel non-heme iron-binding ferritin related to the DNA-binding proteins of the Dps family in Listeria innocua [J].
Bozzi, M ;
Mignogna, G ;
Stefanini, S ;
Barra, D ;
Longhi, C ;
Valenti, P ;
Chiancone, E .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (06) :3259-3265
[6]   Fine tangled pili expressed by Haemophilus ducreyi are a novel class of pili [J].
Brentjens, RJ ;
Ketterer, M ;
Apicella, MA ;
Spinola, SM .
JOURNAL OF BACTERIOLOGY, 1996, 178 (03) :808-816
[7]   GEOMETRIC SOURCES OF REDUNDANCY IN INTENSITY DATA AND THEIR USE FOR PHASE DETERMINATION [J].
BRICOGNE, G .
ACTA CRYSTALLOGRAPHICA SECTION A, 1974, A 30 (MAY1) :395-405
[8]  
Brunger A. T., 1992, X PLOR VERSION 3 1 S
[9]   BACILLUS-SUBTILIS MRGA IS A DPS(PEXB) HOMOLOG - EVIDENCE FOR METALLOREGULATION OF AN OXIDATIVE-STRESS GENE [J].
CHEN, L ;
HELMANN, JD .
MOLECULAR MICROBIOLOGY, 1995, 18 (02) :295-300
[10]   The structure of Desulfovibrio vulgaris rubrerythrin reveals a unique combination of rubredoxin-like FeS4 and ferritin-like diiron domains [J].
deMare, F ;
Kurtz, DM ;
Nordlund, P .
NATURE STRUCTURAL BIOLOGY, 1996, 3 (06) :539-546