Sequence-based cancer genomics: Progress, lessons and opportunities

被引:44
作者
Strausberg, RL
Simpson, AJG
Wooster, R
机构
[1] NCI, Bethesda, MD 20892 USA
[2] Ludwig Inst Canc Res, New York, NY 10158 USA
[3] Wellcome Trust Sanger Inst, Cambridge CB10 1SA, England
基金
巴西圣保罗研究基金会;
关键词
D O I
10.1038/nrg1085
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Technologies that provide a genome-wide view offer an unprecedented opportunity to scrutinize the molecular biology of the cancer cell. The information that is derived from these technologies is well suited to the development of public databases of alterations in the cancer genome and its expression. Here, we describe the synergistic efforts of research programmes in Brazil, the United Kingdom and the United States towards building integrated databases that are widely accessible to the research community, to enable basic and applied applications in cancer research.
引用
收藏
页码:409 / 418
页数:10
相关论文
共 74 条
[1]   SEQUENCE IDENTIFICATION OF 2,375 HUMAN BRAIN GENES [J].
ADAMS, MD ;
DUBNICK, M ;
KERLAVAGE, AR ;
MORENO, R ;
KELLEY, JM ;
UTTERBACK, TR ;
NAGLE, JW ;
FIELDS, C ;
VENTER, JC .
NATURE, 1992, 355 (6361) :632-634
[2]   The lymphochip: A specialized cDNA microarray for the genomic-scale analysis of gene expression in normal and malignant lymphocytes [J].
Alizadeh, A ;
Eisen, M ;
Davis, RE ;
Ma, C ;
Sabet, H ;
Tran, T ;
Powell, JI ;
Yang, L ;
Marti, GE ;
Moore, DT ;
Hudson, JR ;
Chan, WC ;
Greiner, T ;
Weisenburger, D ;
Armitage, JO ;
Lossos, I ;
Levy, R ;
Botstein, D ;
Brown, PO ;
Staudt, LM .
COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY, 1999, 64 :71-78
[3]   Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling [J].
Alizadeh, AA ;
Eisen, MB ;
Davis, RE ;
Ma, C ;
Lossos, IS ;
Rosenwald, A ;
Boldrick, JG ;
Sabet, H ;
Tran, T ;
Yu, X ;
Powell, JI ;
Yang, LM ;
Marti, GE ;
Moore, T ;
Hudson, J ;
Lu, LS ;
Lewis, DB ;
Tibshirani, R ;
Sherlock, G ;
Chan, WC ;
Greiner, TC ;
Weisenburger, DD ;
Armitage, JO ;
Warnke, R ;
Levy, R ;
Wilson, W ;
Grever, MR ;
Byrd, JC ;
Botstein, D ;
Brown, PO ;
Staudt, LM .
NATURE, 2000, 403 (6769) :503-511
[4]   Databases and tools for browsing genomes [J].
Birney, E ;
Clamp, M ;
Hubbard, T .
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, 2002, 3 :293-310
[5]   An anatomy of normal and malignant gene expression [J].
Boon, K ;
Osório, EC ;
Greenhut, SF ;
Schaefer, CF ;
Shoemaker, J ;
Polyak, K ;
Morin, PJ ;
Buetow, KH ;
Strausberg, RL ;
de Souza, SJ ;
Riggins, GJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (17) :11287-11292
[6]   PAGE-1, an X chromosome-linked GAGE-like gene that is expressed in normal and neoplastic prostate, testis, and uterus [J].
Brinkmann, U ;
Vasmatzis, G ;
Lee, BK ;
Yerushalmi, N ;
Essand, M ;
Pastan, I .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (18) :10757-10762
[7]   Cancer Molecular Analysis Project: Weaving a rich cancer research tapestry [J].
Buetow, KH ;
Klausner, RD ;
Fine, H ;
Kaplan, R ;
Singer, DS ;
Strausberg, RL .
CANCER CELL, 2002, 1 (04) :315-318
[8]   High-throughput development and characterization of a genomewide collection of gene-based single nucleotide polymorphism markers by chip-based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry [J].
Buetow, KH ;
Edmonson, M ;
MacDonald, R ;
Clifford, R ;
Yip, P ;
Kelley, J ;
Little, DP ;
Strausberg, R ;
Koester, H ;
Cantor, CR ;
Braun, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (02) :581-584
[9]  
Bullrich F, 2001, CANCER RES, V61, P6640
[10]   The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome [J].
Camargo, AA ;
Samaia, HPB ;
Dias-Neto, E ;
Simao, DF ;
Migotto, IA ;
Briones, MRS ;
Costa, FF ;
Nagai, MA ;
Verjovski-Almeida, S ;
Zago, MA ;
Andrade, LEC ;
Carrer, H ;
El-Dorry, HFA ;
Espreafico, EM ;
Habr-Gama, A ;
Giannella-Neto, D ;
Goldman, GH ;
Gruber, A ;
Hackel, C ;
Kimura, ET ;
Maciel, RMB ;
Marie, SKN ;
Martins, EAL ;
Nóbrega, MP ;
Paçó-Larson, ML ;
Pardini, MIMC ;
Pereira, GG ;
Pesquero, JB ;
Rodrigues, V ;
Rogatto, SR ;
da Silva, IDCG ;
Sogayar, MC ;
Sonati, MDF ;
Tajara, EH ;
Valentini, SR ;
Alberto, FL ;
Amaral, MEJ ;
Aneas, I ;
Arnaldi, LAT ;
de Assis, AM ;
Bengtson, MH ;
Bergamo, NA ;
Bombonato, V ;
de Camargo, MER ;
Canevari, RA ;
Carraro, DM ;
Cerutti, JM ;
Corrêa, MLC ;
Corrêa, RFR ;
Costa, MCR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (21) :12103-12108