Identification and prediction of common molecular culprits between psoriasis and melanoma via bioinformatical analysis
被引:2
作者:
Mousavi, Seyyed Reza
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机构:
Tabriz Univ Med Sci, Dept Med Genet, Fac Med, Tabriz, IranTabriz Univ Med Sci, Dept Med Genet, Fac Med, Tabriz, Iran
Mousavi, Seyyed Reza
[1
]
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Khosravian, Farinaz
[2
,3
,4
]
Mondeali, Mozhgan
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机构:
Univ Tehran Med Sci, Sch Med, Dept Med Genet, Tehran, IranTabriz Univ Med Sci, Dept Med Genet, Fac Med, Tabriz, Iran
Mondeali, Mozhgan
[5
]
Safi, Asma
论文数: 0引用数: 0
h-index: 0
机构:
Tabriz Univ Med Sci, Dept Med Genet, Fac Med, Tabriz, IranTabriz Univ Med Sci, Dept Med Genet, Fac Med, Tabriz, Iran
Safi, Asma
[1
]
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Feizbakhshan, Sara
[2
,3
]
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Salmanizadeh, Sharareh
[2
,3
]
Foroutan, Farzad Seyed
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机构:
Isfahan Univ Med Sci, Cellular Mol & Genet Res Ctr, Esfahan, Iran
Isfahan Univ Med Sci, Med Genet Res Ctr Genome, Esfahan, Iran
Legal Med Org, Legal Med Res Ctr, Tehran, IranTabriz Univ Med Sci, Dept Med Genet, Fac Med, Tabriz, Iran
Foroutan, Farzad Seyed
[2
,3
,6
]
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Ghaedi, Kamran
[7
]
Salehi, Mansoor
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机构:
Tabriz Univ Med Sci, Dept Med Genet, Fac Med, Tabriz, Iran
Isfahan Univ Med Sci, Cellular Mol & Genet Res Ctr, Esfahan, Iran
Isfahan Univ Med Sci, Med Genet Res Ctr Genome, Esfahan, IranTabriz Univ Med Sci, Dept Med Genet, Fac Med, Tabriz, Iran
Salehi, Mansoor
[1
,2
,3
]
机构:
[1] Tabriz Univ Med Sci, Dept Med Genet, Fac Med, Tabriz, Iran
[2] Isfahan Univ Med Sci, Cellular Mol & Genet Res Ctr, Esfahan, Iran
[3] Isfahan Univ Med Sci, Med Genet Res Ctr Genome, Esfahan, Iran
Background: Psoriasis is an autoimmune, chronic inflammatory dermatosis characterized by excessive hyperproliferation of keratinocytes, manifested by skin lesions. Melanoma is a type of skin cancer that develops from melanocytes. Growing epidemiology evidence has indicated psoriasis could be associated with melanoma. This study aims to explore the common molecular mechanisms that connect psoriasis with melanoma. Methods: Differentially expressed genes (DEGs) were obtained from melanoma and psoriasis GEO datasets. Next, using the GEO2R tool, common DEGs between melanoma and psoriasis samples were picked out. Finally, using in silico analysis, the hub genes and their significant molecular mechanisms were identified. Results: 244 DEGs (p < 0.05, vertical bar LogFC vertical bar >= 1) were shared between psoriasis and melanoma. Of these, 116 were down-regulated, and 62 were up-regulated. In the protein-protein interaction (PPI) network, 19 DEGs were obtained as central nodes with criteria of interaction numbers and considered as hubs. Besides, the most crucial axis (module) among DEGs was predicted. Finally, Toll-like receptors and chemokine signaling pathways were identified as potential mechanisms underlying psoriasis and melanoma. Conclusion: This in-silico study may shed light on the molecular culprits that predispose psoriasis patients to melanoma.
机构:
INSERM, U872, AVENIR Team, F-75006 Paris, France
Univ Paris 05, Paris, France
Univ Paris 06, Paris, France
Graz Univ Technol, Inst Genom & Bioinformat, A-8010 Graz, AustriaINSERM, U872, AVENIR Team, F-75006 Paris, France
Bindea, Gabriela
;
Mlecnik, Bernhard
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h-index: 0
机构:
INSERM, U872, AVENIR Team, F-75006 Paris, France
Univ Paris 05, Paris, France
Univ Paris 06, Paris, FranceINSERM, U872, AVENIR Team, F-75006 Paris, France
Mlecnik, Bernhard
;
Hackl, Hubert
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机构:
Graz Univ Technol, Inst Genom & Bioinformat, A-8010 Graz, AustriaINSERM, U872, AVENIR Team, F-75006 Paris, France
Hackl, Hubert
;
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Charoentong, Pornpimol
;
Tosolini, Marie
论文数: 0引用数: 0
h-index: 0
机构:
INSERM, U872, AVENIR Team, F-75006 Paris, France
Univ Paris 05, Paris, France
Univ Paris 06, Paris, FranceINSERM, U872, AVENIR Team, F-75006 Paris, France
Tosolini, Marie
;
Kirilovsky, Amos
论文数: 0引用数: 0
h-index: 0
机构:
INSERM, U872, AVENIR Team, F-75006 Paris, France
Univ Paris 05, Paris, France
Univ Paris 06, Paris, FranceINSERM, U872, AVENIR Team, F-75006 Paris, France
Kirilovsky, Amos
;
Fridman, Wolf-Herman
论文数: 0引用数: 0
h-index: 0
机构:
INSERM, U872, AVENIR Team, F-75006 Paris, France
Univ Paris 05, Paris, France
Univ Paris 06, Paris, France
HEGP, AP HP, Paris, FranceINSERM, U872, AVENIR Team, F-75006 Paris, France
Fridman, Wolf-Herman
;
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Pages, Franck
;
Trajanoski, Zlatko
论文数: 0引用数: 0
h-index: 0
机构:
Graz Univ Technol, Inst Genom & Bioinformat, A-8010 Graz, AustriaINSERM, U872, AVENIR Team, F-75006 Paris, France
Trajanoski, Zlatko
;
Galon, Jerome
论文数: 0引用数: 0
h-index: 0
机构:
INSERM, U872, AVENIR Team, F-75006 Paris, France
Univ Paris 05, Paris, France
Univ Paris 06, Paris, France
HEGP, AP HP, Paris, FranceINSERM, U872, AVENIR Team, F-75006 Paris, France
机构:
INSERM, U872, AVENIR Team, F-75006 Paris, France
Univ Paris 05, Paris, France
Univ Paris 06, Paris, France
Graz Univ Technol, Inst Genom & Bioinformat, A-8010 Graz, AustriaINSERM, U872, AVENIR Team, F-75006 Paris, France
Bindea, Gabriela
;
Mlecnik, Bernhard
论文数: 0引用数: 0
h-index: 0
机构:
INSERM, U872, AVENIR Team, F-75006 Paris, France
Univ Paris 05, Paris, France
Univ Paris 06, Paris, FranceINSERM, U872, AVENIR Team, F-75006 Paris, France
Mlecnik, Bernhard
;
Hackl, Hubert
论文数: 0引用数: 0
h-index: 0
机构:
Graz Univ Technol, Inst Genom & Bioinformat, A-8010 Graz, AustriaINSERM, U872, AVENIR Team, F-75006 Paris, France
Hackl, Hubert
;
论文数: 引用数:
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机构:
Charoentong, Pornpimol
;
Tosolini, Marie
论文数: 0引用数: 0
h-index: 0
机构:
INSERM, U872, AVENIR Team, F-75006 Paris, France
Univ Paris 05, Paris, France
Univ Paris 06, Paris, FranceINSERM, U872, AVENIR Team, F-75006 Paris, France
Tosolini, Marie
;
Kirilovsky, Amos
论文数: 0引用数: 0
h-index: 0
机构:
INSERM, U872, AVENIR Team, F-75006 Paris, France
Univ Paris 05, Paris, France
Univ Paris 06, Paris, FranceINSERM, U872, AVENIR Team, F-75006 Paris, France
Kirilovsky, Amos
;
Fridman, Wolf-Herman
论文数: 0引用数: 0
h-index: 0
机构:
INSERM, U872, AVENIR Team, F-75006 Paris, France
Univ Paris 05, Paris, France
Univ Paris 06, Paris, France
HEGP, AP HP, Paris, FranceINSERM, U872, AVENIR Team, F-75006 Paris, France
Fridman, Wolf-Herman
;
论文数: 引用数:
h-index:
机构:
Pages, Franck
;
Trajanoski, Zlatko
论文数: 0引用数: 0
h-index: 0
机构:
Graz Univ Technol, Inst Genom & Bioinformat, A-8010 Graz, AustriaINSERM, U872, AVENIR Team, F-75006 Paris, France
Trajanoski, Zlatko
;
Galon, Jerome
论文数: 0引用数: 0
h-index: 0
机构:
INSERM, U872, AVENIR Team, F-75006 Paris, France
Univ Paris 05, Paris, France
Univ Paris 06, Paris, France
HEGP, AP HP, Paris, FranceINSERM, U872, AVENIR Team, F-75006 Paris, France