Identification and prediction of common molecular culprits between psoriasis and melanoma via bioinformatical analysis

被引:2
作者
Mousavi, Seyyed Reza [1 ]
Khosravian, Farinaz [2 ,3 ,4 ]
Mondeali, Mozhgan [5 ]
Safi, Asma [1 ]
Feizbakhshan, Sara [2 ,3 ]
Salmanizadeh, Sharareh [2 ,3 ]
Foroutan, Farzad Seyed [2 ,3 ,6 ]
Ghaedi, Kamran [7 ]
Salehi, Mansoor [1 ,2 ,3 ]
机构
[1] Tabriz Univ Med Sci, Dept Med Genet, Fac Med, Tabriz, Iran
[2] Isfahan Univ Med Sci, Cellular Mol & Genet Res Ctr, Esfahan, Iran
[3] Isfahan Univ Med Sci, Med Genet Res Ctr Genome, Esfahan, Iran
[4] Isfahan Univ Med Sci, Sch Med, Dept Genet & Mol Biol, Esfahan 8175954319, Iran
[5] Univ Tehran Med Sci, Sch Med, Dept Med Genet, Tehran, Iran
[6] Legal Med Org, Legal Med Res Ctr, Tehran, Iran
[7] Univ Isfahan, Fac Biol Sci & Technol, Dept Cell & Mol Biol & Microbiol, Esfahan, Iran
关键词
Gene expression omnibus; Psoriasis; Melanoma; Differentially expressed genes; Signaling pathway; TOLL-LIKE RECEPTORS; INTERFERON-GAMMA; EPIDEMIOLOGY; PATHOGENESIS; MECHANISMS; CYTOSCAPE; CXCL10; GROWTH; CCL27;
D O I
10.1016/j.genrep.2021.101143
中图分类号
Q3 [遗传学];
学科分类号
071007 [遗传学];
摘要
Background: Psoriasis is an autoimmune, chronic inflammatory dermatosis characterized by excessive hyperproliferation of keratinocytes, manifested by skin lesions. Melanoma is a type of skin cancer that develops from melanocytes. Growing epidemiology evidence has indicated psoriasis could be associated with melanoma. This study aims to explore the common molecular mechanisms that connect psoriasis with melanoma. Methods: Differentially expressed genes (DEGs) were obtained from melanoma and psoriasis GEO datasets. Next, using the GEO2R tool, common DEGs between melanoma and psoriasis samples were picked out. Finally, using in silico analysis, the hub genes and their significant molecular mechanisms were identified. Results: 244 DEGs (p < 0.05, vertical bar LogFC vertical bar >= 1) were shared between psoriasis and melanoma. Of these, 116 were down-regulated, and 62 were up-regulated. In the protein-protein interaction (PPI) network, 19 DEGs were obtained as central nodes with criteria of interaction numbers and considered as hubs. Besides, the most crucial axis (module) among DEGs was predicted. Finally, Toll-like receptors and chemokine signaling pathways were identified as potential mechanisms underlying psoriasis and melanoma. Conclusion: This in-silico study may shed light on the molecular culprits that predispose psoriasis patients to melanoma.
引用
收藏
页数:8
相关论文
共 34 条
[1]
[Anonymous], 2015, MELANOMA TREATMENT P
[2]
An automated method for finding molecular complexes in large protein interaction networks [J].
Bader, GD ;
Hogue, CW .
BMC BIOINFORMATICS, 2003, 4 (1)
[3]
Begon E, 2007, EUR J DERMATOL, V17, P497
[4]
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks [J].
Bindea, Gabriela ;
Mlecnik, Bernhard ;
Hackl, Hubert ;
Charoentong, Pornpimol ;
Tosolini, Marie ;
Kirilovsky, Amos ;
Fridman, Wolf-Herman ;
Pages, Franck ;
Trajanoski, Zlatko ;
Galon, Jerome .
BIOINFORMATICS, 2009, 25 (08) :1091-1093
[5]
Etiology and Pathogenesis of Psoriasis [J].
Boehncke, Wolf-Henning .
RHEUMATIC DISEASE CLINICS OF NORTH AMERICA, 2015, 41 (04) :665-+
[6]
Psoriasis - epidemiology and clinical spectrum [J].
Christophers, E .
CLINICAL AND EXPERIMENTAL DERMATOLOGY, 2001, 26 (04) :314-320
[7]
The Inflammatory Response in Psoriasis: a Comprehensive Review [J].
Deng, Yaxiong ;
Chang, Christopher ;
Lu, Qianjin .
CLINICAL REVIEWS IN ALLERGY & IMMUNOLOGY, 2016, 50 (03) :377-389
[8]
Duffin KC, 2008, J RHEUMATOL, V35, P1449
[10]
Bioinformatic Analysis Identifies Potential Key Genes in the Pathogenesis of Melanoma [J].
Han, Yanjie ;
Li, Xinxin ;
Yan, Jiliang ;
Ma, Chunyan ;
Wang, Xin ;
Pan, Hong ;
Zheng, Xiaoli ;
Zhang, Zhen ;
Gao, Biao ;
Ji, Xin-Ying .
FRONTIERS IN ONCOLOGY, 2020, 10