The UCSC Genome Browser Database

被引：1209

作者：

Karolchik, D ^{[1
]}

Baertsch, R ^{[1
]}

Diekhans, M ^{[1
]}

Furey, TS ^{[1
]}

Hinrichs, A ^{[1
]}

Lu, YT ^{[1
]}

Roskin, KM ^{[1
]}

Schwartz, M ^{[1
]}

Sugnet, CW ^{[1
]}

Thomas, DJ ^{[1
]}

Weber, RJ ^{[1
]}

Haussler, D ^{[1
]}

Kent, WJ ^{[1
]}

机构：

[1] Univ Calif Santa Cruz, Sch Engn, Genome Bioinformat Grp, Santa Cruz, CA 95064 USA

来源：

NUCLEIC ACIDS RESEARCH | 2003年 / 31卷 / 01期

关键词：

D O I：

10.1093/nar/gkg129

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The University of California Santa Cruz (UCSC) Genome Browser Database is an up to date source for genome sequence data integrated with a large collection of related annotations. The database is optimized to support fast interactive performance with the web-based UCSC Genome Browser, a tool built on top of the database for rapid visualization and querying of the data at many levels. The annotations for a given genome are displayed in the browser as a series of tracks aligned with the genomic sequence. Sequence data and annotations may also be viewed in a text-based tabular format or downloaded as tab-delimited at files. The Genome Browser Database, browsing tools and downloadable data files can all be found on the UCSC Genome Bioinformatics website (http://genome.ucsc.edu), which also contains links to documentation and related technical information.

引用

页码：51 / 54

页数：4

共 12 条

[1] GenBank
Benson, DA
Boguski, MS
Lipman, DJ
Ostell, J
Ouellette, BFF
Rapp, BA
Wheeler, DL
[J]. NUCLEIC ACIDS RESEARCH, 1999, 27 (01) : 12 - 17
[2] Prediction of complete gene structures in human genomic DNA
Burge, C
Karlin, S
[J]. JOURNAL OF MOLECULAR BIOLOGY, 1997, 268 (01) : 78 - 94
[3] Integration of cytogenetic landmarks into the draft sequence of the human genome
Cheung, VG
Nowak, N
Jang, W
Kirsch, IR
Zhao, S
Chen, XN
Furey, TS
Kim, UJ
Kuo, WL
Olivier, M
Conroy, J
Kasprzyk, A
Massa, H
Yonescu, R
Sait, S
Thoreen, C
Snijders, A
Lemyre, E
Bailey, JA
Bruzel, A
Burrill, WD
Clegg, SM
Collins, S
Dhami, P
Friedman, C
Han, CS
Herrick, S
Lee, J
Ligon, AH
Lowry, S
Morley, M
Narasimhan, S
Osoegawa, K
Peng, Z
Plajzer-Frick, I
Quade, BJ
Scott, D
Sirotkin, K
Thorpe, AA
Gray, JW
Hudson, J
Pinkel, D
Ried, T
Rowen, L
Shen-Ong, GL
Strausberg, RL
Birney, E
Callen, DF
Cheng, JF
Cox, DR
[J]. NATURE, 2001, 409 (6822) : 953 - 958
[4] The Distributed Annotation System
Dowell, Robin D.
Jokerst, Rodney M.
Day, Allen
Eddy, Sean R.
Stein, Lincoln
[J]. BMC BIOINFORMATICS, 2001, 2 (1)
[5] The Ensembl genome database project
Hubbard, T
Barker, D
Birney, E
Cameron, G
Chen, Y
Clark, L
Cox, T
Cuff, J
Curwen, V
Down, T
Durbin, R
Eyras, E
Gilbert, J
Hammond, M
Huminiecki, L
Kasprzyk, A
Lehvaslaiho, H
Lijnzaad, P
Melsopp, C
Mongin, E
Pettett, R
Pocock, M
Potter, S
Rust, A
Schmidt, E
Searle, S
Slater, G
Smith, J
Spooner, W
Stabenau, A
Stalker, J
Stupka, E
Ureta-Vidal, A
Vastrik, I
Clamp, M
[J]. NUCLEIC ACIDS RESEARCH, 2002, 30 (01) : 38 - 41
[6] The human genome browser at UCSC
Kent, WJ
Sugnet, CW
Furey, TS
Roskin, KM
Pringle, TH
Zahler, AM
Haussler, D
[J]. GENOME RESEARCH, 2002, 12 (06) : 996 - 1006
[7] Kent WJ, 2002, GENOME RES, V12, P656, DOI [10.1101/gr.229202, 10.1101/gr.229202. Article published online before March 2002]
[8] KENT WJ, 2002, LINUX J, V99, P68
[9] KULP D, 1996, ISMB, V4, P134
[10] Initial sequencing and analysis of the human genome
Lander, ES
Int Human Genome Sequencing Consortium
Linton, LM
Birren, B
Nusbaum, C
Zody, MC
Baldwin, J
Devon, K
Dewar, K
Doyle, M
FitzHugh, W
Funke, R
Gage, D
Harris, K
Heaford, A
Howland, J
Kann, L
Lehoczky, J
LeVine, R
McEwan, P
McKernan, K
Meldrim, J
Mesirov, JP
Miranda, C
Morris, W
Naylor, J
Raymond, C
Rosetti, M
Santos, R
Sheridan, A
Sougnez, C
Stange-Thomann, N
Stojanovic, N
Subramanian, A
Wyman, D
Rogers, J
Sulston, J
Ainscough, R
Beck, S
Bentley, D
Burton, J
Clee, C
Carter, N
Coulson, A
Deadman, R
Deloukas, P
Dunham, A
Dunham, I
Durbin, R
French, L
[J]. NATURE, 2001, 409 (6822) : 860 - 921

← 1 2 →