The current study was undertaken to evaluate both maxillary and mandibular shape/size changes in children with Class III malocclusions, treated with a functional appliance (removable mandibular retractor). Nonconventional cephalometric methods (Bookstein's shape coordinate analysis, centroid size analysis, and tensor analysis) were applied to a maxillary triangle (T-FMN-A) and to a mandibular triangle (Co-Go-Pg). A group of 30 children with treated Class III malocclusions were compared with a matched group of 30 children with untreated Class III malocclusions. Treatment with the functional appliance produced a significantly increased growth of the maxilla, featuring a more downward and forward displacement of the region of point A and a significantly more upward and forward direction of condylar growth, leading to a "shrinkage" of total mandibular length. The biologic significance of some conventional cephalometric measurements used for the assessment of both maxillary and mandibular position and structure was tested.