Innovation - Detection and interpretation of altered methylation patterns in cancer cells

被引:395
作者
Ushijima, T [1 ]
机构
[1] Natl Canc Ctr, Res Inst, Div Carcinogenesis, Chuo Ku, Tokyo 1040045, Japan
关键词
D O I
10.1038/nrc1571
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Epigenetic alterations, such as abnormal DNA-methylation patterns, are associated with many human tumour types. New techniques have been developed to perform genome-wide screening for alterations in DNA-methylation patterns, not only to identify tumour-suppressor genes, but also to find patterns that can be used in diagnosis and prognosis. However, interpretation of differential methylation has proven difficult because the significance of methylation alterations depends on the genomic region, and functions of CpG islands at specific sites have not been fully clarified. What techniques can be used to identify new tumour suppressors and diagnostic markers?
引用
收藏
页码:223 / 231
页数:9
相关论文
共 90 条
[1]   Cloning of the 5′ upstream region of the rat p16 gene and its role in silencing [J].
Abe, M ;
Okochi, E ;
Kuramoto, T ;
Kaneda, A ;
Takato, T ;
Sugimura, T ;
Ushijima, T .
JAPANESE JOURNAL OF CANCER RESEARCH, 2002, 93 (10) :1100-1106
[2]  
ABE M, IN PRESS CANC RES
[3]   Tumour class prediction and discovery by microarray-based DNA methylation analysis -: art. no. e21 [J].
Adorján, P ;
Distler, J ;
Lipscher, E ;
Model, F ;
Müller, J ;
Pelet, C ;
Braun, A ;
Florl, AR ;
Gütig, D ;
Grabs, G ;
Howe, A ;
Kursar, M ;
Lesche, R ;
Leu, E ;
Lewin, A ;
Maier, S ;
Müller, V ;
Otto, T ;
Scholz, C ;
Schulz, WA ;
Seifert, HH ;
Schwope, I ;
Ziebarth, H ;
Berlin, K ;
Piepenbrock, C ;
Olek, A .
NUCLEIC ACIDS RESEARCH, 2002, 30 (05) :e21
[4]  
Ahuja N, 1998, CANCER RES, V58, P5489
[5]   Reduced expression of GNA11 and silencing of MCT1 in human breast cancers [J].
Asada, K ;
Miyamoto, K ;
Fukutomi, T ;
Tsuda, H ;
Yagi, Y ;
Wakazono, K ;
Oishi, S ;
Fukui, H ;
Sugimura, T ;
Ushijima, T .
ONCOLOGY, 2003, 64 (04) :380-388
[6]   Methyl-CpG binding proteins identify novel sites of epigenetic inactivation in human cancer [J].
Ballestar, E ;
Paz, MF ;
Valle, L ;
Wei, S ;
Fraga, MF ;
Espada, J ;
Cigudosa, JC ;
Huang, THM ;
Esteller, M .
EMBO JOURNAL, 2003, 22 (23) :6335-6345
[7]   Gene-promoter hypermethylation as a biomarker in lung cancer [J].
Belinsky, SA .
NATURE REVIEWS CANCER, 2004, 4 (09) :707-717
[8]   Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene [J].
Bell, AC ;
Felsenfeld, G .
NATURE, 2000, 405 (6785) :482-485
[9]  
Bender CM, 1999, MOL CELL BIOL, V19, P6690
[10]   DNA methylation patterns and epigenetic memory [J].
Bird, A .
GENES & DEVELOPMENT, 2002, 16 (01) :6-21