Database on the structure of small ribosomal subunit RNA

被引:106
作者
Van de Peer, Y [1 ]
Caers, A [1 ]
De Rijk, P [1 ]
De Wachter, R [1 ]
机构
[1] Univ Instelling Antwerp, Dept Biochem, B-2610 Antwerp, Belgium
关键词
D O I
10.1093/nar/26.1.179
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
About 8600 complete or nearly complete sequences are now available from the Antwerp database on small ribosomal subunit RNA. All these sequences are aligned with one another on the basis of the adopted secondary structure model, which is corroborated by the observation of compensating substitutions in the alignment. Literature references, accession numbers and detailed taxonomic information are also compiled, The database can be consulted via the World Wide Web at URL http://rrna.uia.ac.be/ssu/.
引用
收藏
页码:179 / 182
页数:4
相关论文
共 24 条
[1]  
Ainsworth GC, 1973, FUNGI ADV TREATISE, VIV
[2]   GenBank [J].
Benson, DA ;
Boguski, MS ;
Lipman, DJ ;
Ostell, J ;
Ouellette, BFF .
NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :1-7
[3]   GenBank [J].
Benson, Dennis A. ;
Karsch-Mizrachi, Ilene ;
Lipman, David J. ;
Ostell, James ;
Sayers, Eric W. .
NUCLEIC ACIDS RESEARCH, 2011, 39 :D32-D37
[4]  
Brusca R.C., 1990, Invertebrates
[5]  
Cronquist A, 1971, INTRO BOT, Vsecond
[6]   COMPILATION OF SMALL RIBOSOMAL-SUBUNIT RNA SEQUENCES [J].
DERIJK, P ;
NEEFS, JM ;
VANDEPEER, Y ;
DEWACHTER, R .
NUCLEIC ACIDS RESEARCH, 1992, 20 :2075-2089
[7]   COLLECTION OF SMALL-SUBUNIT (16S- AND 16S-LIKE) RIBOSOMAL-RNA STRUCTURES - 1994 [J].
GUTELL, RR .
NUCLEIC ACIDS RESEARCH, 1994, 22 (17) :3502-3507
[8]  
MOORE RT, 1988, TAXONOMY PUTTING PLA, P61
[9]   COMPILATION OF SMALL RIBOSOMAL-SUBUNIT RNA SEQUENCES [J].
NEEFS, JM ;
VANDEPEER, Y ;
DERIJK, P ;
GORIS, A ;
DEWACHTER, R .
NUCLEIC ACIDS RESEARCH, 1991, 19 :1987-2015
[10]   COMPILATION OF SMALL RIBOSOMAL-SUBUNIT RNA STRUCTURES [J].
NEEFS, JM ;
VANDEPEER, Y ;
DERIJK, P ;
CHAPELLE, S ;
DEWACHTER, R .
NUCLEIC ACIDS RESEARCH, 1993, 21 (13) :3025-3049