Assessing morphological and DNA-based diet analysis techniques in a generalist predator, the arrow squid Nototodarus gouldi

被引:60
作者
Braley, Michelle [1 ]
Goldsworthy, Simon D. [1 ]
Page, Brad [1 ]
Steer, Mike [1 ]
Austin, Jeremy J. [2 ]
机构
[1] S Australian Res & Dev Inst Aquat Sci, Henley Beach, SA 5022, Australia
[2] Univ Adelaide, Sch Earth & Environm Sci, Australian Ctr Ancient DNA, Adelaide, SA 5005, Australia
关键词
arrow squid; diet analysis; generalist predator; molecular; morphological; Southern Ocean; FATTY-ACID-COMPOSITION; GUT CONTENTS; PREY DNA; MOLECULAR SCATOLOGY; FOOD; CEPHALOPODA; OMMASTREPHIDAE; IDENTITY; PRIMERS; ECOLOGY;
D O I
10.1111/j.1755-0998.2009.02767.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Establishing the diets of marine generalist consumers is difficult, with most studies limited to the use of morphological methods for prey identification. Such analyses rely on the preservation of diagnostic hard parts, which can limit taxonomic resolution and introduce biases. DNA-based analyses provide a method to assess the diets of marine species, potentially overcoming many of the limitations introduced by other techniques. This study compared the effectiveness of morphological and DNA-based analysis for determining the diet of a free-ranging generalist predator, the arrow squid (Nototodarus gouldi). A combined approach was more effective than using either of the methods in isolation. Nineteen unique prey taxa were identified, of which six were found by both methods, 10 were only detected using DNA and three were only identified using morphological methods. Morphological techniques only found 50% of the total number of identifiable prey taxa, whereas DNA-based techniques found 84%. This study highlights the benefits of using a combination of techniques to detect and identify prey of generalist marine consumers.
引用
收藏
页码:466 / 474
页数:9
相关论文
共 48 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]  
[Anonymous], 2007, OTOLITHS COMMON AUST
[3]   Foraging biology predicts food web complexity [J].
Beckerman, Andrew P. ;
Petchey, Owen L. ;
Warren, Philip H. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (37) :13745-13749
[4]   Universal primers and PCR of gut contents to study marine invertebrate diets [J].
Blankenship, LE ;
Yayanos, AA .
MOLECULAR ECOLOGY, 2005, 14 (03) :891-899
[5]   Detecting prey from DNA in predator scats:: A comparison with morphological analysis, using Arctocephalus seals fed a known diet [J].
Casper, Ruth M. ;
Jarrnan, Simon N. ;
Deagle, Bruce E. ;
Gales, Nicholas J. ;
Hindell, Mark A. .
JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY, 2007, 347 (1-2) :144-154
[6]   Combining DNA and morphological analyses of faecal samples improves insight into trophic interactions: a case study using a generalist predator [J].
Casper, Ruth M. ;
Jarman, Simon N. ;
Gales, Nicholas J. ;
Hindell, Mark A. .
MARINE BIOLOGY, 2007, 152 (04) :815-825
[7]   Identifying key cereal aphid predators by molecular gut analysis [J].
Chen, Y ;
Giles, KL ;
Payton, ME ;
Greenstone, MH .
MOLECULAR ECOLOGY, 2000, 9 (11) :1887-1898
[8]   Stable isotopes, beaks and predators: a new tool to study the trophic ecology of cephalopods, including giant and colossal squids [J].
Cherel, Y ;
Hobson, KA .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 272 (1572) :1601-1607
[9]   Rapid taste aversion learning in adult cuttlefish, Sepia officinalis [J].
Darmaillacq, AS ;
Dickel, L ;
Chichery, MP ;
Agin, V ;
Chichery, R .
ANIMAL BEHAVIOUR, 2004, 68 :1291-1298
[10]   Genetic screening for prey in the gut contents from a giant squid (Architeuthis sp.) [J].
Deagle, BE ;
Jarman, SN ;
Pemberton, D ;
Gales, NJ .
JOURNAL OF HEREDITY, 2005, 96 (04) :417-423