How consistent are expression chip platforms?

被引：14

作者：

Jordan, BR ^{[1
]}

机构：

[1] Marseille Nice Genopole, F-13288 Marseille 9, France

来源：

BIOESSAYS | 2004年 / 26卷 / 11期

关键词：

D O I：

10.1002/bies.20128

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

DNA arrays are now widely used in academia and industry, and expression profiling is recognised as a major tool for basic research as well as for drug development. It is also likely, in the near future, that DNA arrays will be used in clinical laboratories for diagnostic and prognostic purposes. Since several types of arrays are being used, the coherence of results obtained using these diverse platforms becomes an important issue: to what extent can data obtained in different laboratories and with different equipment be combined? Several recent papers address this issue and demonstrate that the expected agreement is not necessarily found. Consistent results can be obtained, but this requires careful identification of the genes assessed by the arrays, and scrupulous adherence to strict experimental procedures. (C) 2004 Wiley Periodicals, Inc.

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页码：1236 / 1242

页数：7

相关论文

共 15 条

[1] Spotted long oligonucleotide arrays for human gene expression analysis [J].

Barczak, A ;

Rodriguez, MW ;

Hanspers, K ;

Koth, LL ;

Tai, YC ;

Bolstad, BM ;

Speed, TP ;

Erle, DJ .

GENOME RESEARCH, 2003, 13 (07) :1775-1785

[2] Minimum information about a microarray experiment (MIAME) - toward standards for microarray data [J].

Brazma, A ;

Hingamp, P ;

Quackenbush, J ;

Sherlock, G ;

Spellman, P ;

Stoeckert, C ;

Aach, J ;

Ansorge, W ;

Ball, CA ;

Causton, HC ;

Gaasterland, T ;

Glenisson, P ;

Holstege, FCP ;

Kim, IF ;

Markowitz, V ;

Matese, JC ;

Parkinson, H ;

Robinson, A ;

Sarkans, U ;

Schulze-Kremer, S ;

Stewart, J ;

Taylor, R ;

Vilo, J ;

Vingron, M .

NATURE GENETICS, 2001, 29 (04) :365-371

[3]

CAM M, 2003, BIOARRAY NEWS 3, V38, P6

[4] LIGHT-DIRECTED, SPATIALLY ADDRESSABLE PARALLEL CHEMICAL SYNTHESIS [J].

FODOR, SPA ;

READ, JL ;

PIRRUNG, MC ;

STRYER, L ;

LU, AT ;

SOLAS, D .

SCIENCE, 1991, 251 (4995) :767-773

[5] Assessment of clone identity and sequence fidelity for 1189 IMAGE cDNA clones [J].

Halgren, RG ;

Fielden, MR ;

Fong, CJ ;

Zacharewski, TR .

NUCLEIC ACIDS RESEARCH, 2001, 29 (02) :582-588

[6] Options available - from start to finish - for obtaining data from DNA microarrays [J].

Holloway, AJ ;

van Laar, RK ;

Tothill, RW ;

Bowtell, DDL .

NATURE GENETICS, 2002, 32 (Suppl 4) :481-489

[7] Microarray results: how accurate are they? [J].

Kothapalli, R ;

Yoder, SJ ;

Mane, S ;

Loughran, TP .

BMC BIOINFORMATICS, 2002, 3 (1)

[8]

KROCHMAL M, 2004, BIOARRAY NEWS 4, V9, P5

[9] Analysis of matched mRNA measurements from two different microarray technologies [J].

Kuo, WP ;

Jenssen, TK ;

Butte, AJ ;

Ohno-Machado, L ;

Kohane, IS .

BIOINFORMATICS, 2002, 18 (03) :405-412

[10] Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells [J].

Lee, JK ;

Bussey, KJ ;

Gwadry, FG ;

Reinhold, W ;

Riddick, G ;

Pelletier, SL ;

Nishizuka, S ;

Szakacs, G ;

Annereau, JP ;

Shankavaram, U ;

Lababidi, S ;

Smith, LH ;

Gottesman, MM ;

Weinstein, JN .

GENOME BIOLOGY, 2003, 4 (12)