Proton Affinity of the Oxyanion Hole in the Active Site of Ketosteroid Isomerase

被引:27
作者
Childs, William [1 ]
Boxer, Steven G. [1 ]
机构
[1] Stanford Univ, Dept Chem, Stanford, CA 94305 USA
基金
美国国家卫生研究院;
关键词
BARRIER HYDROGEN-BONDS; PHOTOACTIVE YELLOW PROTEIN; ISOTOPIC FRACTIONATION FACTORS; ANION MODEL SYSTEM; PUTIDA BIOTYPE B; DELTA(5)-3-KETOSTEROID ISOMERASE; ENZYMATIC CATALYSIS; 3-OXO-DELTA(5)-STEROID ISOMERASE; DELTA-5-3-KETOSTEROID ISOMERASE; AB-INITIO;
D O I
10.1021/bi100074s
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The absorption spectra of a series of inhibitors bound at the active site of A Delta(5)-3-ketosteroid isomerase from Pseudomonas putida were found to exhibit substantial variations in the contributions of the protonated and deprotonated forms. Systematic variation of the inhibitor solution pK(a) combined with a method of quantifying the contributions of each protonation state showed the oxyanion hole in the active site of wild-type Delta(5)-3-ketosteroid isomerase to have a proton affinity equal to a solution pK(a) of 10.05 +/- 0.03, which is similar to the measured pK(a) (10.0) of the reaction intermediate. This observation Supports the prediction of Cleland, Kreevoy, Frey, Gassman, and Gerlt that an enzyme Utilizing a strong hydrogen bond for catalysis matches the proton affinity of the protein to the intermediate [Cleland, W. W., and Kreevoy, M. M. (1994) Science 264, 1887-1890; Frey, P. A., Whitt, S., and Tobin, J. (1994) Science 264, 1927-1930; Gerlt, J. A., and Gassman, P. G. (1993) Biochemistry 32, 11934-11952]. As the difference in proton affinity decreases, the strength of the hydrogen bond increases, and the closely matched proton affinity between the active site and the reaction intermediate supports the possibility that a short, strong hydrogen bond is catalytically relevant in Delta(5)-3-ketosteroid isomerase.
引用
收藏
页码:2725 / 2731
页数:7
相关论文
共 35 条
[1]   Short hydrogen bonds in photoactive yellow protein [J].
Anderson, S ;
Crosson, S ;
Moffat, K .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :1008-1016
[2]  
[Anonymous], BIOCHEMISTRY-US
[3]   Asp-99 donates a hydrogen bond not to tyr-14 but to the steroid directly in the catalytic mechanism of Δ5-3-ketosteroid isomerase from Pseudomonas putida biotype B [J].
Choi, G ;
Ha, NC ;
Kim, SW ;
Kim, DH ;
Park, S ;
Oh, BH ;
Choi, KY .
BIOCHEMISTRY, 2000, 39 (05) :903-909
[4]   Low-barrier hydrogen bonds and enzymatic catalysis [J].
Cleland, WW .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 2000, 382 (01) :1-5
[5]   LOW-BARRIER HYDROGEN-BONDS AND ENZYMATIC CATALYSIS [J].
CLELAND, WW ;
KREEVOY, MM .
SCIENCE, 1994, 264 (5167) :1887-1890
[6]   The catalytic power of ketosteroid isomerase investigated by computer simulation [J].
Feierberg, I ;
Åqvist, J .
BIOCHEMISTRY, 2002, 41 (52) :15728-15735
[7]   A LOW-BARRIER HYDROGEN-BOND IN THE CATALYTIC TRIAD OF SERINE PROTEASES [J].
FREY, PA ;
WHITT, SA ;
TOBIN, JB .
SCIENCE, 1994, 264 (5167) :1927-1930
[8]   Theoretical study of the low-barrier hydrogen bond in the hydrogen maleate anion in the gas phase. Comparison with normal hydrogen bonds [J].
GarciaViloca, M ;
GonzalezLafont, A ;
Lluch, JM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (05) :1081-1086
[9]   AN EXPLANATION FOR RAPID ENZYME-CATALYZED PROTON ABSTRACTION FROM CARBON ACIDS - IMPORTANCE OF LATE TRANSITION-STATES IN CONCERTED MECHANISMS [J].
GERLT, JA ;
GASSMAN, PG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1993, 115 (24) :11552-11568
[10]   CALCULATION OF PROTEIN EXTINCTION COEFFICIENTS FROM AMINO-ACID SEQUENCE DATA [J].
GILL, SC ;
VONHIPPEL, PH .
ANALYTICAL BIOCHEMISTRY, 1989, 182 (02) :319-326