A class-wide phylogenetic assessment of Dothideomycetes

被引：555

作者：

Schoch, C. L. ^{[1
]}

Crous, P. W. ^{[2
]}

Groenewald, J. Z. ^{[2
]}

Boehm, E. W. A. ^{[3
]}

Burgess, T. I. ^{[4
]}

de Gruyter, J. ^{[2
,5
]}

de Hoog, G. S. ^{[2
]}

Dixon, L. J. ^{[6
]}

Grube, M. ^{[7
]}

Gueidan, C. ^{[2
]}

Harada, Y. ^{[8
]}

Hatakeyama, S. ^{[8
]}

Hirayama, K. ^{[8
]}

Hosoya, T. ^{[9
]}

Huhndorf, S. M. ^{[10
]}

Hyde, K. D. ^{[11
,33
]}

Jones, E. B. G. ^{[12
]}

Kohlmeyer, J. ^{[13
]}

Kruys, A. ^{[14
]}

Li, Y. M. ^{[33
]}

Lucking, R. ^{[10
]}

Lumbsch, H. T. ^{[10
]}

Marvanova, L. ^{[15
]}

Mbatchou, J. S. ^{[10
,16
]}

McVay, A. H. ^{[17
]}

Miller, A. N. ^{[18
]}

Mugambi, G. K. ^{[10
,19
,27
]}

Muggia, L. ^{[7
]}

Nelsen, M. P. ^{[10
,20
]}

Nelson, P. ^{[21
]}

Owensby, C. A. ^{[17
]}

Phillips, A. J. L. ^{[22
]}

Phongpaichit, S. ^{[23
]}

Pointing, S. B. ^{[24
]}

Pujade-Renaud, V. ^{[25
]}

Raja, H. A. ^{[26
]}

Plata, E. Rivas ^{[10
,27
]}

Robbertse, B. ^{[1
]}

Ruibal, C. ^{[28
]}

Sakayaroj, J. ^{[12
]}

Sano, T. ^{[8
]}

Selbmann, L. ^{[29
]}

Shearer, C. A. ^{[26
]}

Shirouzu, T. ^{[30
]}

Slippers, B. ^{[31
]}

Suetrong, S. ^{[12
,23
]}

Tanaka, K. ^{[8
]}

Volkmann-Kohlmeyer, B. ^{[13
]}

Wingfield, M. J. ^{[31
]}

Wood, A. R. ^{[32
]}

机构：

[1] NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD 20892 USA

[2] CBS KNAW Fungal Biodivers Ctr, NL-3508 AD Utrecht, Netherlands

[3] Kean Univ, Dept Biol Sci, Union, NJ 07083 USA

[4] Murdoch Univ, Murdoch, WA 6150, Australia

[5] Plant Protect Serv, NL-6700 HC Wageningen, Netherlands

[6] USDA ARS, Systemat Mycol & Microbiol Lab, Beltsville, MD 20705 USA

[7] Karl Franzens Univ Graz, Inst Plant Sci, Graz, Austria

[8] Hirosaki Univ, Fac Agr & Life Sci, Aomori 0368561, Japan

[9] Natl Museum Nat & Sci, Tsukuba, Ibaraki 3050005, Japan

[10] Field Museum, Dept Bot, Chicago, IL 60605 USA

[11] Mae Fah Luang Univ, Sch Sci 17, Muang 57100, Chiang Rai, Thailand

[12] Natl Ctr Genet Engn & Biotechnol BIOTEC, Bioresources Technol Unit, Khlong Luang 12120, Pathum Thani, Thailand

[13] Univ N Carolina Chapel Hill, Inst Marine Sci, Morehead City, NC 28557 USA

[14] Uppsala Univ, Evolutionary Biol Ctr, Dept Systemat Biol, SE-75236 Uppsala, Sweden

[15] Masaryk Univ, Fac Sci, Inst Expt Biol, CZ-60200 Brno, Czech Republic

[16] Depaul Univ, Coll Liberal Arts & Sci, Chicago, IL 60604 USA

[17] Oregon State Univ, Dept Bot & Plant Pathol, Corvallis, OR 97331 USA

[18] Univ Illinois, Illinois Nat Hist Survey, Champaign, IL 61820 USA

[19] Natl Museums Kenya, Dept Bot, Nairobi 00100, Kenya

[20] Univ Chicago, Comm Evolutionary Biol, Chicago, IL 60637 USA

[21] Univ Minnesota, St Paul, MN 55108 USA

[22] Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Ciencias Vida, Ctr Recursos Microbiol, P-2829516 Quinta Da Torre, Caparica, Portugal

[23] Prince Songkia Univ, Fac Sci, Dept Microbiol, Hat Yai 90112, Songkhla, Thailand

[24] Univ Hong Kong, Sch Biol Sci, Div Microbiol, Hong Kong, Hong Kong, Peoples R China

[25] Univ Blaise Pascal, CIRAD PIAF, F-63177 Aubiere, France

[26] Univ Illinois, Dept Plant Biol, Urbana, IL 61801 USA

[27] Univ Illinois, Dept Biol Sci, Chicago, IL 60607 USA

[28] Univ Politecn Madrid, Escuela Tecn Super Ingenieros Ind, Dept Ingn & Ciencia Mat, E-28006 Madrid, Spain

[29] Largo Univ, Univ Tuscia, DECOS, Viterbo, Italy

[30] Tottori Univ, Fungus Mushroom Resource & Res Ctr, Tottori 6808553, Japan

[31] Univ Pretoria, Fac Nat & Agr Sci, Dept Genet, Ctr Excellence Tree Hlth Biotechnol,FABI, ZA-0002 Pretoria, South Africa

[32] ARC Plant Protect Res Inst, ZA-7599 Stellenbosch, South Africa

[33] Chinese Acad Forestry, Res Inst Resource Insects, Int Fungal Res Dev Ctr, Kunming, Yunnan, Peoples R China

来源：

STUDIES IN MYCOLOGY | 2009年 / 64期

基金：

美国国家科学基金会;

关键词：

Ascomycota; Pezizomycotina; Dothideomyceta; fungal evolution; lichens; multigene phylogeny; phylogenomics; plant pathogens; saprobes; Tree of Life; MOLECULAR PHYLOGENY; MAXIMUM-LIKELIHOOD; MULTIPLE ALIGNMENT; SEQUENCE ANALYSES; ASCOMYCOTA TREE; DNA; EVOLUTION; CLASSIFICATION; FUNGI; NUCLEAR;

D O I：

10.3114/sim.2009.64.01

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycelidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon.

引用

页码：1 / 15

页数：15

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