Validation of a model for the complex of HIV-1 reverse transcriptase with nonnucleoside inhibitor TMC125

被引:63
作者
Udier-Blagovic, M [1 ]
Tirado-Rives, J [1 ]
Jorgensen, WL [1 ]
机构
[1] Yale Univ, Dept Chem, New Haven, CT 06520 USA
关键词
D O I
10.1021/ja034308c
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The structure for the complex of nonnucleoside inhibitor TMC125 and HIV-1 reverse transcriptase has been determined and validated through computation of resistance profiles using Monte Carlo/free-energy perturbation calculations. The good quantitative agreement between the computed and experimental anti-HIV activities for TMC125, nevirapine, and efavirenz with wild-type RT and four common mutants (L100I, K103N, Y181C, and Y188L) confirms the correctness of the predicted structure and provides insights into the improved potency of this novel NNRTI. The blue shading in the figure indicates basic residues. Copyright © 2003 American Chemical Society.
引用
收藏
页码:6016 / 6017
页数:2
相关论文
共 20 条
[1]   Therapies: Confronting the limits of success [J].
Cohen, J .
SCIENCE, 2002, 296 (5577) :2320-2324
[2]   New developments in anti-HIV chemotherapy [J].
De Clercq, E .
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE, 2002, 1587 (2-3) :258-275
[3]   Nonnucleoside reverse transcriptase inhibitor resistance [J].
Deeks, SG .
JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES, 2001, 26 :S25-S33
[4]  
GRUZDEV B, 2001, 41 INT C ANT AG CHEM
[5]   Complexes of HIV-1 reverse transcriptase with inhibitors of the HEPT series reveal conformational changes relevant to the design of potent non-nucleoside inhibitors [J].
Hopkins, AL ;
Ren, JS ;
Esnouf, RM ;
Willcox, BE ;
Jones, EY ;
Ross, C ;
Miyasaka, T ;
Walker, RT ;
Tanaka, H ;
Stammers, DK ;
Stuart, DI .
JOURNAL OF MEDICINAL CHEMISTRY, 1996, 39 (08) :1589-1600
[6]  
JORGENSEN WL, 1998, ENCY COMPUTATIONAL C, V2, P1061
[7]  
JORGENSEN WL, 2002, GENMOL V 1 8
[8]  
JORGENSEN WL, 2001, MCPRO VERSION 1 68
[9]   Structural basis for the inhibitory efficacy of efavirenz (DMP-266), MSC194 and PNU142721 towards the HIV-1 RT K103N mutant [J].
Lindberg, J ;
Sigurdsson, S ;
Löwgren, S ;
Andersson, HO ;
Sahlberg, C ;
Noréen, R ;
Fridborg, K ;
Zhang, H ;
Unge, T .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 2002, 269 (06) :1670-1677
[10]   Evolution of anti-HIV drug candidates.: Part 3:: Diarylpyrimidine (DAPY) analogues [J].
Ludovici, DW ;
De Corte, BL ;
Kukla, MJ ;
Ye, H ;
Ho, CY ;
Lichtenstein, MA ;
Kavash, RW ;
Andries, K ;
de Béthune, MP ;
Azijn, H ;
Pauwels, R ;
Lewi, PJ ;
Heeres, J ;
Koymans, LMH ;
de Jonge, MR ;
Van Aken, KJA ;
Daeyaert, FFD ;
Das, K ;
Arnold, E ;
Janssen, PAJ .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2001, 11 (17) :2235-2239