RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis

被引:81
作者
Vijayakumar, SRV [1 ]
Kirchhof, MG [1 ]
Patten, CL [1 ]
Schellhorn, HE [1 ]
机构
[1] McMaster Univ, Dept Biol, Hamilton, ON L8S 4K1, Canada
关键词
D O I
10.1128/JB.186.24.8499-8507.2004
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
RpoS is a conserved alternative sigma factor that regulates the expression of many stress response genes in Escherichia coli. The RpoS regulon is large but has not yet been completely characterized. In this study, we report the identification of over 100 RpoS-dependent fusions in a genetic screen based on the differential expression of an operon-lacZ fusion bank in rpoS mutant and wild-type backgrounds. Forty-eight independent gene fusions were identified, including several in well-characterized RpoS-regulated genes, such as osmY, katE, and otsA. Many of the other fusions mapped to genes of unknown function or to genes that were not previously known to be under RpoS control. Based on the homology to other known bacterial genes, some of the RpoS-regulated genes of unknown functions are likely important in nutrient scavenging.
引用
收藏
页码:8499 / 8507
页数:9
相关论文
共 92 条
[1]   Two genes from Bacillus subtilis under the sale control of the general stress transcription factor σB [J].
Akbar, S ;
Lee, SY ;
Boylan, SA ;
Price, CW .
MICROBIOLOGY-UK, 1999, 145 :1069-1078
[2]   A NOVEL DNA-BINDING PROTEIN WITH REGULATORY AND PROTECTIVE ROLES IN STARVED ESCHERICHIA-COLI [J].
ALMIRON, M ;
LINK, AJ ;
FURLONG, D ;
KOLTER, R .
GENES & DEVELOPMENT, 1992, 6 (12B) :2646-2654
[3]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[4]   A small, stable RNA induced by oxidative stress: Role as a pleiotropic regulator and antimutator [J].
Altuvia, S ;
WeinsteinFischer, D ;
Zhang, AX ;
Postow, L ;
Storz, G .
CELL, 1997, 90 (01) :43-53
[5]   Effects of sigma(S) and the transcriptional activator AppY on induction of the Escherichia coli hya and cbdAB-appA operons in response to carbon and phosphate starvation [J].
Atlung, T ;
Knudsen, K ;
Heerfordt, L ;
Brondsted, L .
JOURNAL OF BACTERIOLOGY, 1997, 179 (07) :2141-2146
[6]   H-NS: A modulator of environmentally regulated gene expression [J].
Atlung, T ;
Ingmer, H .
MOLECULAR MICROBIOLOGY, 1997, 24 (01) :7-17
[7]   Escherichia coli CreBC is a global regulator of gene expression that responds to growth in minimal media [J].
Avison, MB ;
Horton, RE ;
Walsh, TR ;
Bennett, PM .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (29) :26955-26961
[8]   Escherichia coli genes regulated by cell-to-cell signaling [J].
Baca-DeLancey, RR ;
South, MMT ;
Ding, XD ;
Rather, PN .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (08) :4610-4614
[9]   The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 [J].
Bairoch, A ;
Apweiler, R .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :45-48
[10]   ROLE FOR THE HISTONE-LIKE PROTEIN H-NS IN GROWTH PHASE-DEPENDENT AND OSMOTIC REGULATION OF SIGMA(S) AND MANY SIGMA(S)-DEPENDENT GENES IN ESCHERICHIA-COLI [J].
BARTH, M ;
MARSCHALL, C ;
MUFFLER, A ;
FISCHER, D ;
HENGGEARONIS, R .
JOURNAL OF BACTERIOLOGY, 1995, 177 (12) :3455-3464