jmzML, an open-source Java']Java API for mzML, the PSI standard for MS data

被引：44

作者：

Cote, Richard G. ^{[2
]}

Reisinger, Florian ^{[2
]}

Martens, Lennart ^{[1
,3
]}

机构：

[1] Univ Ghent VIB, Dept Med Prot Res, B-9000 Ghent, Belgium

[2] European Bioinformat Inst, EMBL Outstn, Cambridge, England

[3] Univ Ghent, Dept Biochem, B-9000 Ghent, Belgium

来源：

PROTEOMICS | 2010年 / 10卷 / 07期

关键词：

Bioinformatics; !text type='Java']Java[!/text] API; Proteomics Standards Initiative MS standard; XML processing; PROTEOMICS DATA; TOOLS;

D O I：

10.1002/pmic.200900719

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

We here present jmzML, a Java API for the Proteomics Standards Initiative mzML data standard. Based on the Java Architecture for XML Binding and XPath-based XML indexer random-access XML parser, jmzML can handle arbitrarily large files in minimal memory, allowing easy and efficient processing of mzML files using the Java programming language. jmzML also automatically resolves internal XML references on-the-fly. The library (which includes a viewer) can be downloaded from http://jmzml.googlecode.com.

引用

页码：1332 / 1335

页数：4

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