Viral Genome DataBase: storing and analyzing genes and proteins from complete viral genomes

被引：24

作者：

Hiscock, D ^{[1
]}

Upton, C ^{[1
]}

机构：

[1] Univ Victoria, Dept Biochem & Microbiol, Victoria, BC V8W 3P6, Canada

来源：

BIOINFORMATICS | 2000年 / 16卷 / 05期

基金：

英国医学研究理事会; 加拿大自然科学与工程研究理事会;

关键词：

D O I：

10.1093/bioinformatics/16.5.484

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The Viral Genome DataBase (VGDB) contains detailed information of the genes and predicted protein sequences from 15 completely sequenced genomes of large (> 100 kb) viruses (2847 genes). The data that is stored includes DNA sequence, protein sequence, GenBank and user-entered notes, molecular weight (MW), isoelectric point (pI), amino acid content, A+T%, nucleotide frequency dinucleotide frequency and codon use. The VGDB is a mySQL database with a user-friendly JAVA GUI. Results of queries can be easily sorted by any of the individual parameters. Availability: The software and additional figures and information are available at http://athena.bioc.uvic.ca/genomes/index.html. Contact: cupton@uvic.ca

引用

页码：484 / 485

页数：2