Visualization of a slow, ATP-induced structural transition in the bacterial molecular chaperone DnaK

Recent reports have shown that the binding of ATP to a 79-kDa molecular chaperone induces a rapid global conformational transition from a "high affinity" state to a "low affinity" state, where these states are defined by tight and weak binding to (poly)peptides, respectively. To complete the activity cycle, a chaperone molecule must ultimately return to the high affinity state. In this report, this return to the high affinity state was studied using a chemical cross-linking assay in conjunction with SDS-polyacrylamide gel electrophoresis, The basis for this assay is that in the absence of nucleotide or in the presence of ADP, conditions that stabilize the high affinity state, cross-linking of the Escherichia coli molecular chaperone DnaK yielded two monomeric forms, with apparent molecular masses of 70 kDa (77%) and 90 kDa (23%), whereas cross-linking yielded only the 70-kDa monomeric form in the presence of ATP, This ATP-dependent difference in cross-linking was used to follow the kinetics of the low affinity to high affinity transition under single turnover conditions. The rate of this transition (k(obs) = 3.4 (+/-0.6) x 10(-4) s(-1) at 25 degrees C) is almost identical to the reported rate of ATP hydrolysis (k(hy) = 2.7 (+/-0.7) x 10(-4) s(-1) at 22 degrees C). These results are consistent with a two-step sequential reaction where rate-limiting ATP hydrolysis precedes the conformational change, Models for the formation of two cross-linked DnaK monomers in the absence of ATP are discussed.