RDP2: recombination detection and analysis from sequence alignments

被引：851

作者：

Martin, DP ^{[1
]}

Williamson, C

Posada, D

机构：

[1] Univ Cape Town, Inst Infect Dis & Mol Med, ZA-7000 Cape Town, South Africa

[2] Univ Vigo, Dept Biochem Genet & Immunol, Vigo 36200, Spain

来源：

BIOINFORMATICS | 2005年 / 21卷 / 02期

关键词：

D O I：

10.1093/bioinformatics/bth490

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

RDP2 is a Windows 95/XP program that examines nucleotide sequence alignments and attempts to identify recombinant sequences and recombination breakpoints using 10 published recombination detection methods, including GENECONV, BOOTSCAN, MAXIMUM chi(2), CHIMAERA and SISTER SCANNING. The program enables fast automated analysis of large alignments (up to 300 sequences containing 13 000 sites), and interactive exploration, management and verification of results with different recombination detection and tree drawing methods.

引用

页码：260 / 262

页数：3

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