Introducing meta-services for biomedical information extraction

被引：38

作者：

Leitner, Florian ^{[1
]}

Krallinger, Martin ^{[1
]}

Rodriguez-Penagos, Carlos ^{[1
]}

Hakenberg, Joerg ^{[2
,3
]}

Plake, Conrad ^{[2
]}

Kuo, Cheng-Ju ^{[4
,5
]}

Hsu, Chun-Nan ^{[5
]}

Tsai, Richard Tzong-Han ^{[6
]}

Hung, Hsi-Chuan ^{[5
]}

Lau, William W. ^{[7
]}

Johnson, Calvin A. ^{[7
]}

Saetre, Rune ^{[8
]}

Yoshida, Kazuhiro ^{[8
]}

Chen, Yan Hua ^{[9
]}

Kim, Sun ^{[10
]}

Shin, Soo-Yong ^{[10
]}

Zhang, Byoung-Tak ^{[10
]}

Baumgartner, William A., Jr. ^{[11
]}

Hunter, Lawrence ^{[11
]}

Haddow, Barry ^{[12
]}

Matthews, Michael ^{[12
]}

Wang, Xinglong ^{[12
]}

Ruch, Patrick ^{[13
]}

Ehrler, Frederic ^{[14
]}

Oezguer, Arzucan ^{[15
]}

Erkan, Guenes ^{[15
]}

Radev, Dragomir R. ^{[15
]}

Krauthammer, Michael ^{[16
]}

Luong, ThaiBinh ^{[17
]}

Hoffmann, Robert ^{[18
]}

Sander, Chris ^{[19
]}

Valencia, Alfonso ^{[1
]}

机构：

[1] Spanish Natl Canc Res Ctr CNIO, Struct Biol & Biocomp Programme, Madrid 28029, Spain

[2] Tech Univ Dresden, Ctr Biotechnol, Bioinformat Grp, D-01307 Dresden, Germany

[3] Humboldt Univ, D-10099 Berlin, Germany

[4] Natl Yang Ming Univ, Inst Bioinformat, Taipei 112, Taiwan

[5] Acad Sinica, Inst Informat Sci, Taipei 115, Taiwan

[6] Yuan Ze Univ, Dept Comp Sci & Engn, Tao Yuan 32003, Taiwan

[7] NIH, Div Computat Biosci, Ctr Informat Technol, Bethesda, MD 20892 USA

[8] Univ Tokyo, Dept Comp Sci, Bunkyo Ku, Tokyo 1130033, Japan

[9] Norwegian Univ Sci & Technol, Dept Comp & Informat Sci, NO-7491 Trondheim, Norway

[10] Seoul Natl Univ, Biointelligence Lab, Sch Engn & Comp Sci, Seoul 151744, South Korea

[11] Univ Colorado, Sch Med, Ctr Computat Pharmacol, Aurora, CO 80045 USA

[12] Univ Edinburgh, Sch Informat, Edinburgh EH8 9LW, Midlothian, Scotland

[13] Univ & Hosp Geneva, Med Informat Serv, Text Min Grp, CH-1201 Geneva, Switzerland

[14] Univ Geneva, Artificial Intelligence Grp, CH-1227 Carouge, Switzerland

[15] Univ Michigan, Dept Elect Engn & Comp Sci, Ann Arbor, MI 48109 USA

[16] Yale Univ, Sch Med, Dept Pathol, New Haven, CT 06520 USA

[17] Yale Univ, Program Computat Biol & Bioinformat, New Haven, CT 06520 USA

[18] MIT, Comp Sci & Artificial Intelligence Lab, Cambridge, MA 02139 USA

[19] Mem Sloan Kettering Canc Ctr, Computat Biol Ctr, New York, NY 10065 USA

来源：

GENOME BIOLOGY | 2008年 / 9卷

关键词：

D O I：

10.1186/gb-2008-9-S2-S6

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

We introduce the first meta-service for information extraction in molecular biology, the BioCreative MetaServer (BCMS; http://bcms.bioinfo.cnio.es/). This prototype platform is a joint effort of 13 research groups and provides automatically generated annotations for PubMed/Medline abstracts. Annotation types cover gene names, gene IDs, species, and protein-protein interactions. The annotations are distributed by the meta-server in both human and machine readable formats (HTML/XML). This service is intended to be used bybiomedical researchers and database annotators, and in biomedical language processing. The platform allows direct comparison, unified access, and result aggregation of the annotations.

引用

页数：11

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