Identification of compounds with binding affinity to proteins via magnetization transfer from bulk water

被引:358
作者
Dalvit, C [1 ]
Pevarello, P [1 ]
Tatò, M [1 ]
Veronesi, M [1 ]
Vulpetti, A [1 ]
Sundström, M [1 ]
机构
[1] Pharmacia, I-20014 Nerviano, MI, Italy
关键词
bulk water; magnetization transfer; NMR screening; protein hydration; protein-ligand interactions;
D O I
10.1023/A:1008354229396
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A powerful screening by NMR methodology (WaterLOGSY), based on transfer of magnetization from bulk water, for the identification of compounds that interact with target biomolecules (proteins, RNA and DNA fragments) is described. The method exploits efficiently the large reservoir of H2O magnetization. The high sensitivity of the technique reduces the amount of biomolecule and ligands needed for the screening, which constitutes an important requirement for high throughput screening by NMR of large libraries of compounds. Application of the method to a compound mixture against the cyclin-dependent kinase 2 (cdk2) protein is presented.
引用
收藏
页码:65 / 68
页数:4
相关论文
共 31 条
  • [1] NOE pumping: A novel NMR technique for identification of compounds with binding affinity to macromolecules
    Chen, A
    Shapiro, MJ
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (39) : 10258 - 10259
  • [2] NOE pumping. 2. A high-throughput method to determine compounds with binding affinity to macromolecules by NMR
    Chen, AD
    Shapiro, MJ
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (02) : 414 - 415
  • [3] Homonuclear 1D and 2D NMR experiments for the observation of solvent-solute interactions
    Dalvit, C
    [J]. JOURNAL OF MAGNETIC RESONANCE SERIES B, 1996, 112 (03): : 282 - 288
  • [4] Half-filter experiments for assignment, structure determination and hydration analysis of unlabelled ligands bound to 13C/15N labelled proteins
    Dalvit, C
    Cottens, S
    Ramage, P
    Hommel, U
    [J]. JOURNAL OF BIOMOLECULAR NMR, 1999, 13 (01) : 43 - 50
  • [5] Sensitivity-improved detection of protein hydration and its extension to the assignment of fast-exchanging resonances
    Dalvit, C
    Hommel, U
    [J]. JOURNAL OF MAGNETIC RESONANCE SERIES B, 1995, 109 (03): : 334 - 338
  • [6] EFFECTS OF INTERMEDIATE EXCHANGE PROCESSES ON THE ESTIMATION OF EQUILIBRIUM-CONSTANTS BY NMR
    FEENEY, J
    BATCHELOR, JG
    ALBRAND, JP
    ROBERTS, GCK
    [J]. JOURNAL OF MAGNETIC RESONANCE, 1979, 33 (03) : 519 - 529
  • [7] The SHAPES strategy: an NMR-based approach for lead generation in drug discovery
    Fejzo, J
    Lepre, CA
    Peng, JW
    Bemis, GW
    Ajay
    Murcko, MA
    Moore, JM
    [J]. CHEMISTRY & BIOLOGY, 1999, 6 (10): : 755 - 769
  • [8] One-dimensional relaxation- and diffusion-edited NMR methods for screening compounds that bind to macromolecules
    Hajduk, PJ
    Olejniczak, ET
    Fesik, SW
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (50) : 12257 - 12261
  • [9] Discovery of potent nonpeptide inhibitors of stromelysin using SAR by NMR
    Hajduk, PJ
    Sheppard, G
    Nettesheim, DG
    Olejniczak, ET
    Shuker, SB
    Meadows, RP
    Steinman, DH
    Carrera, GM
    Marcotte, PA
    Severin, J
    Walter, K
    Smith, H
    Gubbins, E
    Simmer, R
    Holzman, TF
    Morgan, DW
    Davidsen, SK
    Summers, JB
    Fesik, SW
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (25) : 5818 - 5827
  • [10] Henrichsen D, 1999, ANGEW CHEM INT EDIT, V38, P98, DOI 10.1002/(SICI)1521-3773(19990115)38:1/2<98::AID-ANIE98>3.3.CO