Prediction of the codling sequences of unidentified human genes.: XVI.: The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro

被引:217
作者
Nagase, T [1 ]
Kikuno, R [1 ]
Ishikawa, KI [1 ]
Hirosawa, M [1 ]
Ohara, O [1 ]
机构
[1] Kazusa DNA Res Inst, Chiba 2920812, Japan
关键词
large proteins; in vitro transcription/translation; cDNA sequencing; expression profile; chromosomal location; brain;
D O I
10.1093/dnares/7.1.65
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
We have carried out a human cDNA sequencing project to accumulate information regarding the coding sequences of unidentified human genes. As an extension of the preceding reports, we herein present the entire sequences of 150 cDNA clones of unknown human genes, named KIAA1294 to KIAA1443, from two sets of size-fractionated human adult and fetal brain cDNA libraries. The average sizes of the inserts and corresponding open reading frames of cDNA clones analyzed here reached 4.8 kb and 2.7 kb (910 amino acid residues), respectively. From sequence similarities and protein motifs, 73 predicted gene products were functionally annotated and 97% of them were classified into the following four functional categories: cell signaling/communication, nucleic acid management, cell structure/motility and protein management. Additionally, the chromosomal loci of the genes were assigned by using human-rodent hybrid panels for those genes whose mapping data were not available in the public databases. The expression profiles of the genes were also studied in 10 human tissues, 8 brain regions, spinal cord, fetal brain and fetal liver by reverse transcription-coupled polymerase chain reaction, products of which were quantified by enzyme-linked immunosorbent assay.
引用
收藏
页码:65 / 73
页数:9
相关论文
共 18 条
  • [1] Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins
    Bateman, A
    Birney, E
    Durbin, R
    Eddy, SR
    Finn, RD
    Sonnhammer, ELL
    [J]. NUCLEIC ACIDS RESEARCH, 1999, 27 (01) : 260 - 262
  • [2] BLEASBY AJ, 1994, NUCLEIC ACIDS RES, V22, P3574
  • [3] Genome sequence of the nematode C-elegans:: A platform for investigating biology
    不详
    [J]. SCIENCE, 1998, 282 (5396) : 2012 - 2018
  • [4] Life with 6000 genes
    Goffeau, A
    Barrell, BG
    Bussey, H
    Davis, RW
    Dujon, B
    Feldmann, H
    Galibert, F
    Hoheisel, JD
    Jacq, C
    Johnston, M
    Louis, EJ
    Mewes, HW
    Murakami, Y
    Philippsen, P
    Tettelin, H
    Oliver, SG
    [J]. SCIENCE, 1996, 274 (5287) : 546 - &
  • [5] A radiation hybrid map of the human genome
    Gyapay, G
    Schmitt, K
    Fizames, C
    Jones, H
    VegaCzarny, N
    Spillett, D
    Muselet, D
    PrudHomme, JF
    Dib, C
    Auffray, C
    Morissette, J
    Weissenbach, J
    Goodfellow, PN
    [J]. HUMAN MOLECULAR GENETICS, 1996, 5 (03) : 339 - 346
  • [6] Hirosawa M, 1999, DNA Res, V6, P329, DOI 10.1093/dnares/6.5.329
  • [7] Structures, alternative splicing, and neurexin binding of multiple neuroligins
    Ichtchenko, K
    Nguyen, T
    Sudhof, TC
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 1996, 271 (05) : 2676 - 2682
  • [8] Ishikawa K, 1997, DNA Res, V4, P307, DOI 10.1093/dnares/4.5.307
  • [9] HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project
    Kikuno, R
    Nagase, T
    Suyama, M
    Waki, M
    Hirosawa, M
    Ohara, O
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 331 - 332
  • [10] Nagase T, 1999, DNA Res, V6, P337, DOI 10.1093/dnares/6.5.337