On the complexity of directed biological networks

被引:33
作者
Bonchev, D [1 ]
机构
[1] Texas A&M Univ, Program Theory Complex Nat Syst, Galveston, TX 77551 USA
关键词
biological networks; complexity; directed graphs; network descriptors; accessibility;
D O I
10.1080/1062936031000101764
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Recently, there was an increased interest towards network approach to biology and environmental sciences. Networks are believed to be the key to the understanding of the work of biological machine in cells, organs, organisms, and ecosystems. While complexity of undirected networks has been recently analyzed, the assessment of complexity in directed networks has specificity that has not been explored so far. The present paper aims to address the existing gap by discussing the applicability of the available complexity descriptors. New specific measures (vertex accessibility, accessible connectedness, and adjusted average distance) are introduced based on assessment of the reduced accessibility of nodes in directed networks.
引用
收藏
页码:199 / 214
页数:16
相关论文
共 38 条
[1]   Statistical mechanics of complex networks [J].
Albert, R ;
Barabási, AL .
REVIEWS OF MODERN PHYSICS, 2002, 74 (01) :47-97
[2]  
BARABASI AL, 2002, LINKED NEW SCI NETWO, P166
[3]  
Bertz S.H., 1998, Graph Theory Notes of New York, V35, P32
[4]   THE SIMILARITY OF GRAPHS AND MOLECULES [J].
BERTZ, SH ;
HERNDON, WC .
ACS SYMPOSIUM SERIES, 1986, 306 :169-175
[5]   The overall Wiener index - A new tool for characterization of molecular topology [J].
Bonchev, D .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2001, 41 (03) :582-592
[6]   INFORMATION-THEORY, DISTANCE MATRIX, AND MOLECULAR BRANCHING [J].
BONCHEV, D ;
TRINAJSTIC, N .
JOURNAL OF CHEMICAL PHYSICS, 1977, 67 (10) :4517-4533
[7]   Overall molecular descriptors. 3. Overall Zagreb indices [J].
Bonchev, D ;
Trinajstic, N .
SAR AND QSAR IN ENVIRONMENTAL RESEARCH, 2001, 12 (1-2) :213-236
[8]   Overall connectivity - a next generation molecular connectivity [J].
Bonchev, D .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2001, 20 (01) :65-75
[9]   Overall connectivities/topological complexities: A new powerful tool for QSPR/QSAR [J].
Bonchev, D .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2000, 40 (04) :934-941
[10]  
BONCHEV D, 1983, INFORMATION THEORETI