The PDB-Preview database:: a repository of in-silico models of 'on-hold' PDB entries

被引：2

作者：

Fischer, D

Pas, J

Rychlewski, L

机构：

[1] BioInfoBank Inst, PL-60744 Poznan, Poland

[2] Univ Buffalo, Buffalo Ctr Excellence Bioinformat, Buffalo, NY 14203 USA

[3] Adam Mickiewicz Univ Poznan, Dept Phys, PL-61614 Poznan, Poland

来源：

BIOINFORMATICS | 2004年 / 20卷 / 15期

关键词：

D O I：

10.1093/bioinformatics/bth262

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The PDB-Preview database is a dynamic web repository of in-silico predicted three-dimensional (3D) models of experimentally determined structures that are deposited into the PDB but are not yet publicly released, and are kept 'on-hold'. The PDB-Preview database is automatically generated on a weekly basis by the bioinfo.pl meta-server, which uses top-of-the-line fold-recognition methods. The PDB-Preview provides biologists with preliminary fold assignments well before the experimentally determined 3D structures are released.

引用

收藏

页码：2482 / 2484

页数：3

相关论文

共 11 条

[1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].

Altschul, SF ;

Madden, TL ;

Schaffer, AA ;

Zhang, JH ;

Zhang, Z ;

Miller, W ;

Lipman, DJ .

NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402

[2] BASIC LOCAL ALIGNMENT SEARCH TOOL [J].

ALTSCHUL, SF ;

GISH, W ;

MILLER, W ;

MYERS, EW ;

LIPMAN, DJ .

JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410

[3] Structure prediction meta server [J].

Bujnicki, JM ;

Elofsson, A ;

Fischer, D ;

Rychlewski, L .

BIOINFORMATICS, 2001, 17 (08) :750-751

[4] The 2002 olympic games of protein structure prediction [J].

Fischer, D ;

Rychlewski, L .

PROTEIN ENGINEERING, 2003, 16 (03) :157-160

[5] CAFASP3: The third critical assessment of fully automated structure prediction methods [J].

Fischer, D ;

Rychlewski, L ;

Dunbrack, RL ;

Ortiz, AR ;

Elofsson, A .

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2003, 53 :503-516

[6] 3D-Jury: a simple approach to improve protein structure predictions [J].

Ginalski, K ;

Elofsson, A ;

Fischer, D ;

Rychlewski, L .

BIOINFORMATICS, 2003, 19 (08) :1015-1018

[7] CASP5 assessment of fold recognition target predictions [J].

Kinch, LN ;

Wrabl, JO ;

Krishna, SS ;

Majumdar, I ;

Sadreyev, RI ;

Qi, Y ;

Pei, JM ;

Cheng, H ;

Grishin, NV .

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2003, 53 :395-409

[8] EVA:: evaluation of protein structure prediction servers [J].

Koh, IYY ;

Eyrich, VA ;

Marti-Renom, MA ;

Przybylski, D ;

Madhusudhan, MS ;

Eswar, N ;

Graña, O ;

Pazos, F ;

Valencia, A ;

Sali, A ;

Rost, B .

NUCLEIC ACIDS RESEARCH, 2003, 31 (13) :3311-3315

[9] Clustering of highly homologous sequences to reduce the size of large protein databases [J].

Li, WZ ;

Jaroszewski, L ;

Godzik, A .

BIOINFORMATICS, 2001, 17 (03) :282-283

[10] LiveBench-6: Large-scale automated evaluation of protein structure prediction servers [J].

Rychlewski, L ;

Fischer, D ;

Elofsson, A .

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2003, 53 :542-547