Widespread occurrence of a novel division of bacteria identified by 16S rRNA gene sequences originally found in deep marine Sediments

被引：89

作者：

Webster, G

Parkes, RJ

Fry, JC

Weightman, AJ

机构：

[1] Cardiff Univ, Cardiff Sch Biosci, Cardiff CF10 3TL, S Glam, Wales

[2] Cardiff Univ, Cardiff Sch Earth Ocean & Planetary Sci, Cardiff CF10 3TL, S Glam, Wales

来源：

APPLIED AND ENVIRONMENTAL MICROBIOLOGY | 2004年 / 70卷 / 09期

关键词：

D O I：

10.1128/AEM.70.9.5708-5713.2004

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Phylogenetic analysis of 16S rRNA gene sequences from deep marine sediments identified a deeply branching clade, designated candidate division JS1. Primers for PCR amplification of partial 16S rRNA genes that target the JS1 division were developed and used to detect JS1 sequences in DNA extracted from various sedimentary environments, including, for the first time, coastal marine and brackish sediments.

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页码：5708 / 5713

页数：6

相关论文

共 36 条

[1] PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database [J].

Ashelford, KE ;

Weightman, AJ ;

Fry, JC .

NUCLEIC ACIDS RESEARCH, 2002, 30 (15) :3481-3489

[2] Desulfovibrio profundus sp nov, a novel barophilic sulfate-reducing bacterium from deep sediment layers in the Japan Sea [J].

Bale, SJ ;

Goodman, K ;

Rochelle, PA ;

Marchesi, JR ;

Fry, JC ;

Weightman, AJ ;

Parkes, RJ .

INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1997, 47 (02) :515-521

[3] A multiple-outgroup approach to resolving division-level phylogenetic relationships using 16S rDNA data [J].

Dalevi, D ;

Hugenholtz, P ;

Blackall, LL .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2001, 51 :385-391

[4] Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin [J].

Dhillon, A ;

Teske, A ;

Dillon, J ;

Stahl, DA ;

Sogin, ML .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (05) :2765-2772

[5] Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria [J].

Dojka, MA ;

Harris, JK ;

Pace, NR .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2000, 66 (04) :1617-1621

[6] Microsporidia are related to Fungi: Evidence from the largest subunit of RNA polymerase II and other proteins [J].

Hirt, RP ;

Logsdon, JM ;

Healy, B ;

Dorey, MW ;

Doolittle, WF ;

Embley, TM .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (02) :580-585

[7] Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity [J].

Hugenholtz, P ;

Goebel, BM ;

Pace, NR .

JOURNAL OF BACTERIOLOGY, 1998, 180 (18) :4765-4774

[8] Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk [J].

Inagaki, F ;

Suzuki, M ;

Takai, K ;

Oida, H ;

Sakamoto, T ;

Aoki, K ;

Nealson, KH ;

Horikoshi, K .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (12) :7224-7235

[9] Archaeology of Archaea: geomicrobiological record of Pleistocene thermal events concealed in a deep-sea subseafloor environment [J].

Inagaki, F ;

Takai, K ;

Komatsu, T ;

Kanamatsu, T ;

Fujioka, K ;

Horikoshi, K .

EXTREMOPHILES, 2001, 5 (06) :385-392

[10]

Kato C, 1998, APPL ENVIRON MICROB, V64, P1510

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