Ultrafast repair of irradiated DNA:: Nonadiabatic ab initio simulations of the guanine-cytosine photocycle

被引:47
作者
Markwick, Phineus R. L.
Doltsinis, Nikos L. [1 ]
机构
[1] Ruhr Univ Bochum, Lehrstuhl Theoret Chem, D-44780 Bochum, Germany
[2] Inst Biol Struct, F-38027 Grenoble, France
关键词
D O I
10.1063/1.2728897
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Nonadiabatic first-principles molecular dynamics simulations have been performed of the photoexcited Watson-Crick guanine-cytosine (GC) DNA base pair in the gas phase and in aqueous solution. An excited state coupled proton-electron transfer (CPET) from G to C along the central hydrogen bond is observed upon excitation of the pi pi(*) state initially localized on G. In the resulting charge transfer state a conical intersection between the excited state and the ground state is easily accessible. Therefore radiationless decay is fast, of the order of 100 fs, followed by a rapid CPET back reaction retrieving the initial Watson-Crick structure. A detailed analysis of the mechanism of nonradiative decay suggests a biexponential behavior in which out-of-plane motion plays a special role for the longer decay component. (C) 2007 American Institute of Physics.
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页数:6
相关论文
共 38 条
[1]   Photochemical selectivity in guanine-cytosine base-pair structures [J].
Abo-Riziq, A ;
Grace, L ;
Nir, E ;
Kabelac, M ;
Hobza, P ;
de Vries, MS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (01) :20-23
[2]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[3]   Theoretical study on the excitation energies of six tautomers of guanine: Evidence for the assignment of the rare tautomers [J].
Chen, Hui ;
Li, Shuhua .
JOURNAL OF PHYSICAL CHEMISTRY A, 2006, 110 (45) :12360-12362
[4]   Ultrafast excited-state dynamics in nucleic acids [J].
Crespo-Hernández, CE ;
Cohen, B ;
Hare, PM ;
Kohler, B .
CHEMICAL REVIEWS, 2004, 104 (04) :1977-2019
[5]  
Doltsinis N. L., 2006, COMPUTATIONAL NANOSC
[6]  
Doltsinis N.L., 2002, J THEOR COMPUT CHEM, V1, P319
[7]   Excited state proton transfer and internal conversion in o-hydroxybenzaldehyde:: new insights from non-adiabatic ab initio molecular dynamics [J].
Doltsinis, NL .
MOLECULAR PHYSICS, 2004, 102 (05) :499-506
[8]   Nonadiabatic Car-Parrinello molecular dynamics [J].
Doltsinis, NL ;
Marx, D .
PHYSICAL REVIEW LETTERS, 2002, 88 (16) :4
[9]  
Domcke W., 2004, Conical Intersections: Electronic Structure, Dynamics and Spectroscopy
[10]  
Advanced Series in Physical Chemistry