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Crowdsourced analysis of clinical trial data to predict amyotrophic lateral sclerosis progression
被引:148
作者:
Kueffner, Robert
[1
,2
]
Zach, Neta
[3
,4
]
Norel, Raquel
[5
]
Hawe, Johann
[2
]
Schoenfeld, David
[6
,7
]
Wang, Liuxia
[8
]
Li, Guang
[8
]
Fang, Lilly
[9
]
Mackey, Lester
[10
]
Hardiman, Orla
[11
,12
]
Cudkowicz, Merit
[13
]
Sherman, Alexander
[13
]
Ertaylan, Gokhan
[14
]
Grosse-Wentrup, Moritz
[15
]
Hothorn, Torsten
[16
]
van Ligtenberg, Jules
[17
]
Macke, Jakob H.
[18
,19
]
Meyer, Timm
[15
]
Schoelkopf, Bernhard
[15
]
Tran, Linh
[20
]
Vaughan, Rubio
[17
]
Stolovitzky, Gustavo
Leitner, Melanie L.
[3
,4
,21
]
机构:
[1] German Res Ctr Environm Hlth, Inst Bioinformat & Syst Biol, Munich, Germany
[2] Univ Munich, Dept Informat, Munich, Germany
[3] Prize4Life, Tel Aviv, Israel
[4] Prize4Life, Cambridge, MA USA
[5] IBM TJ Watson Res Ctr, Yorktown Hts, NY USA
[6] Massachusetts Gen Hosp, MGH Biostat Ctr, Boston, MA 02114 USA
[7] Harvard Univ, Sch Med, Charlestown, MA USA
[8] Sentrana Inc, Washington, DC USA
[9] Latham&Watkins LLP, Silicon Valley, CA USA
[10] Stanford Univ, Dept Stat, Stanford, CA 94305 USA
[11] Beaumont Hosp, Dept Neurosci, Dublin 9, Ireland
[12] Trinity Coll Dublin, Dublin, Ireland
[13] Massachusetts Gen Hosp, Neurol Clin Res Inst, Charlestown, MA USA
[14] Univ Luxembourg, Esch Alzette, Luxembourg Ctr Syst Biomed, Luxembourg, Luxembourg
[15] Max Planck Inst Intelligent Syst, Tubingen, Germany
[16] Univ Zurich, Inst Social & Prevent Med, Zurich, Switzerland
[17] Orca XL Problem Solvers, Amsterdam, Netherlands
[18] Max Planck Inst Biol Cybernet, Tubingen, Germany
[19] Bernstein Ctr Computat Neurosci, Tubingen, Germany
[20] Univ Calif Berkeley, Berkeley Sch Publ Hlth, Berkeley, CA USA
[21] Biogen Idec Inc, ALS Innovat Hub, Cambridge, MA USA
关键词:
URIC-ACID LEVELS;
BODY-MASS INDEX;
FUNCTIONAL RATING-SCALE;
ALSFRS-R SCORE;
DISEASE PROGRESSION;
PROGNOSTIC-FACTORS;
BLOOD-PRESSURE;
SURVIVAL;
CREATININE;
ALZHEIMERS;
D O I:
10.1038/nbt.3051
中图分类号:
Q81 [生物工程学(生物技术)];
Q93 [微生物学];
学科分类号:
071005 [微生物学];
090105 [作物生产系统与生态工程];
摘要:
Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease with substantial heterogeneity in its clinical presentation. This makes diagnosis and effective treatment difficult, so better tools for estimating disease progression are needed. Here, we report results from the DREAM-Phil Bowen ALS Prediction Prize4Life challenge. In this crowdsourcing competition, competitors developed algorithms for the prediction of disease progression of 1,822 ALS patients from standardized, anonymized phase 2/3 clinical trials. The two best algorithms outperformed a method designed by the challenge organizers as well as predictions by ALS clinicians. We estimate that using both winning algorithms in future trial designs could reduce the required number of patients by at least 20%. The DREAM-Phil Bowen ALS Prediction Prize4Life challenge also identified several potential nonstandard predictors of disease progression including uric acid, creatinine and surprisingly, blood pressure, shedding light on ALS pathobiology. This analysis reveals the potential of a crowdsourcing competition that uses clinical trial data for accelerating ALS research and development.
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页码:51 / U292
页数:9
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