Poised for contagion: Evolutionary origins of the infectious abilities of invertebrate retroviruses

被引:233
作者
Malik, HS
Henikoff, S
Eickbush, TH
机构
[1] Howard Hughes Med Inst, Seattle, WA 98109 USA
[2] Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA
[3] Univ Rochester, Dept Biol, Rochester, NY 14627 USA
关键词
D O I
10.1101/gr.145000
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Phylogenetic analyses suggest that long-terminal repeat (LTR) bearing retrotransposable elements can acquire additional open-reading frames that can enable them to mediate infection. Whereas this process is best documented in the origin of the vertebrate retroviruses and their acquisition of an envelope (env) gene, similar independent events may have occurred in insects, nematodes, and plants. The origins of env-like genes are unclear, and are often masked by the antiquity of the original acquisitions and by their rapid rate of evolution. In this report, we present evidence that in three other possible transitions of LTR retrotransposons to retroviruses, an envelope-like gene was acquired from a viral source. First, the gypsy and related LTR retrotransposable elements (the insect errantiviruses) have acquired their envelope-like gene from a class of insect baculoviruses (double-stranded DNA viruses with no RNA stage). Second, the Cer retroviruses in the Caenorhabditis elegans genome acquired their envelope gene from a Phleboviral (single ambisense-stranded RNA viruses) source. Third, the Tas retroviral envelope (Ascaris lumricoides) may have been obtained from Herpesviridae (double-stranded DNA viruses, no RNA stage). These represent the only cases in which the env gene of a retrovirus has been traced back to its original source. This has implications for the evolutionary history of retroviruses as well as for the potential ability of all LTR-retrotransposable elements to become infectious agents.
引用
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页码:1307 / 1318
页数:12
相关论文
共 41 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   Combining evidence using p-values: application to sequence homology searches [J].
Bailey, TL ;
Gribskov, M .
BIOINFORMATICS, 1998, 14 (01) :48-54
[3]   Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins [J].
Bateman, A ;
Birney, E ;
Durbin, R ;
Eddy, SR ;
Finn, RD ;
Sonnhammer, ELL .
NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :260-262
[4]  
BOEKE JD, 1999, VORUS TAXONOMY
[5]   Genomic analysis of Caenorhabditis elegans reveals ancient families of retroviral-like elements [J].
Bowen, NJ ;
McDonald, JF .
GENOME RESEARCH, 1999, 9 (10) :924-935
[6]   Human cytomegalovirus glycoproteins [J].
Britt, WJ ;
Mach, M .
INTERVIROLOGY, 1996, 39 (5-6) :401-412
[7]  
CLARK JB, 1994, MOL BIOL EVOL, V11, P40
[8]  
Coffin JM, 1997, RETROVIRUSES
[9]   Systematic screening of Anopheles mosquito genomes yields evidence for a major clade of Pao-like retrotransposons [J].
Cook, JM ;
Martin, J ;
Lewin, A ;
Sinden, RE ;
Tristem, M .
INSECT MOLECULAR BIOLOGY, 2000, 9 (01) :109-117
[10]   Mobilization of two retroelements, ZAM and Idefix, in a novel unstable line of Drosophila melanogaster [J].
Desset, S ;
Conte, C ;
Dimitri, P ;
Calco, V ;
Dastugue, B ;
Vaury, C .
MOLECULAR BIOLOGY AND EVOLUTION, 1999, 16 (01) :54-66