Diffusion across proton collecting surfaces

被引:13
作者
Agmon, Noam [1 ]
机构
[1] Hebrew Univ Jerusalem, Inst Chem, Fritz Haber Res Ctr, IL-91904 Jerusalem, Israel
基金
美国国家科学基金会;
关键词
Diffusion; Proton collecting surface; Steady-state rate; MEMBRANE-SURFACE; LIGAND-BINDING; KINETICS; BACTERIORHODOPSIN; ASSOCIATION; RECEPTORS; MECHANISM; TRANSPORT; PROTEINS; DYNAMICS;
D O I
10.1016/j.chemphys.2009.11.004
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A model for a proton collecting apparatus on a protein surface includes a ring-shaped collecting domain on which reversible receptors are scattered. These transport a proton by surface diffusion, until it reaches a central orifice where it is absorbed. Mathematically, this scenario is represented approximately by two-dimensional diffusion on the ring, with steady-state rate coefficients for adsorption/desorption of protons from the bulk (which depend on the bulk diffusion coefficient), and a boundary condition mimicking an irreversible reaction on the orifice perimeter. The ensuing differential equation is of the modified Bessel type, and can therefore be solved analytically in terms of modified Bessel functions. The most general solution involves a reflecting boundary condition on the outer perimeter of the ring, and a radiation one on its inner perimeter. This solution admits numerous special cases, such as when the ring becomes infinite, the inner boundary absorbing, or some parameter small or large. These various limits are discussed, as well as possible implications to experiment. (C) 2009 Elsevier B. V. All rights reserved.
引用
收藏
页码:232 / 237
页数:6
相关论文
共 33 条
[1]  
Abramowitz M., 1970, HDB MATH FUNCTIONS
[2]  
Adam G., 1968, STRUCTURAL CHEM MOL, P198
[3]   Surface-mediated proton-transfer reactions in membrane-bound proteins [J].
Ädelroth, P ;
Brzezinski, P .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2004, 1655 (1-3) :102-115
[4]   TRANSIENT KINETICS OF CHEMICAL-REACTIONS WITH BOUNDED DIFFUSION PERPENDICULAR TO THE REACTION COORDINATE - INTRAMOLECULAR PROCESSES WITH SLOW CONFORMATIONAL-CHANGES [J].
AGMON, N ;
HOPFIELD, JJ .
JOURNAL OF CHEMICAL PHYSICS, 1983, 78 (11) :6947-6959
[5]   DIFFUSIVE DYNAMICS ON POTENTIAL-ENERGY SURFACES - NONEQUILIBRIUM CO BINDING TO HEME-PROTEINS [J].
AGMON, N ;
RABINOVICH, S .
JOURNAL OF CHEMICAL PHYSICS, 1992, 97 (10) :7270-7286
[6]   Boundary homogenization for trapping by patchy surfaces [J].
Berezhkovskii, AM ;
Makhnovskii, YA ;
Monine, MI ;
Zitserman, VY ;
Shvartsman, SY .
JOURNAL OF CHEMICAL PHYSICS, 2004, 121 (22) :11390-11394
[7]   PHYSICS OF CHEMORECEPTION [J].
BERG, HC ;
PURCELL, EM .
BIOPHYSICAL JOURNAL, 1977, 20 (02) :193-219
[8]   ORIENTATION CONSTRAINTS IN DIFFUSION-LIMITED MACROMOLECULAR ASSOCIATION - THE ROLE OF SURFACE-DIFFUSION AS A RATE-ENHANCING MECHANISM [J].
BERG, OG .
BIOPHYSICAL JOURNAL, 1985, 47 (01) :1-14
[9]  
BUCHER T, 1953, ADV ENZYMOL REL S BI, V14, P1
[10]   Mechanism of proton entry into the cytoplasmic section of the proton-conducting channel of bacteriorhodopsin [J].
Checover, S ;
Nachliel, E ;
Dencher, NA ;
Gutman, M .
BIOCHEMISTRY, 1997, 36 (45) :13919-13928