Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project

被引:95
作者
Jack A. Gilbert
Folker Meyer
Dion Antonopoulos
Pavan Balaji
C. Titus Brown
Christopher T. Brown
Narayan Desai
Jonathan A. Eisen
Dirk Evers
Dawn Field
Wu Feng
Daniel Huson
Janet Jansson
Rob Knight
James Knight
Eugene Kolker
Kostas Konstantindis
Joel Kostka
Nikos Kyrpides
Rachel Mackelprang
Alice McHardy
Christopher Quince
Jeroen Raes
Alexander Sczyrba
Ashley Shade
Rick Stevens
机构
[1] Argonne National Laboratory,Department of Ecology and Evolution
[2] University of Chicago,College of Engineering
[3] Michigan State University,Department of Microbiology and Cell Science
[4] University of Florida,Department of Evolution and Ecology
[5] University of California,Department of Computer Science and Department of Electrical & Computer Engineering
[6] DOE Joint Genome Institute,Department of Cancer Biology and Translational Science Institute
[7] Illumina,Center for Bioinformatics ZBIT
[8] NERC Centre for Ecology and Hydrology,Earth Sciences Division
[9] Virginia Tech,School of Civil and Environmental Engineering and School of Biology
[10] Wake Forest University,Department of Algorithmic Bioinformatics
[11] Tübingen University,Max
[12] Lawrence Berkeley National Laboratory,Planck Research Group for Computational Genomics and Epidemiology
[13] Department of Chemistry and Biochemistry,Department of Civil Engineering
[14] Roche-454,Department of Molecular and Cellular Interactions
[15] Seattle Children’s Hospital,Department of Molecular, Cellular and Developmental Biology
[16] Georgia Institute of Technology,undefined
[17] The Florida State University,undefined
[18] Heinrich-Heine University,undefined
[19] Max-Planck-Institut fur Informatik,undefined
[20] University of Glasgow,undefined
[21] VIB - University of Brussels,undefined
[22] Yale University,undefined
关键词
Microbial Community; Microbial Genome; Metabolic Flux Analysis; Metagenomic Data; Human Microbiome Project;
D O I
10.4056/sigs.1433550
中图分类号
学科分类号
摘要
Between July 18th and 24th 2010, 26 leading microbial ecology, computation, bioinformatics and statistics researchers came together in Snowbird, Utah (USA) to discuss the challenge of how to best characterize the microbial world using next-generation sequencing technologies. The meeting was entitled “Terabase Metagenomics” and was sponsored by the Institute for Computing in Science (ICiS) summer 2010 workshop program. The aim of the workshop was to explore the fundamental questions relating to microbial ecology that could be addressed using advances in sequencing potential. Technological advances in next-generation sequencing platforms such as the Illumina HiSeq 2000 can generate in excess of 250 billion base pairs of genetic information in 8 days. Thus, the generation of a trillion base pairs of genetic information is becoming a routine matter. The main outcome from this meeting was the birth of a concept and practical approach to exploring microbial life on earth, the Earth Microbiome Project (EMP). Here we briefly describe the highlights of this meeting and provide an overview of the EMP concept and how it can be applied to exploration of the microbiome of each ecosystem on this planet.
引用
收藏
页码:243 / 248
页数:5
相关论文
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