The auxin-induced transcriptome for etiolated Arabidopsis seedlings using a structure/function approach

被引：48

作者：

John Pufky

Yang Qiu

Mulpuri V. Rao

Patrick Hurban

Alan M. Jones

机构：

[1] Paradigm Genetics, Research Triangle Park, NC

[2] Department of Biology, University of North Carolina, Chapel Hill

来源：

Functional & Integrative Genomics | 2003年 / 3卷 / 4期

基金：

美国国家科学基金会;

关键词：

Abscisic acid; Arabidopsis; Auxenic herbicides; Auxin; Gene expression;

D O I：

10.1007/s10142-003-0093-7

中图分类号：

学科分类号：

摘要：

To increase our understanding of the mode of action of auxin, we analyzed auxin-induced changes in the Arabidopsis transcriptome with microarrays representing 20,426 Arabidopsis genes. Treatment of etiolated seedlings with low concentrations of the auxin, indole-3-acetic acid (IAA), decreased the expression levels of 23 genes, whereas it increased the expression levels of 47 genes within 20 min. After 40 min, the directional trend in genomic change was predominantly an increase in gene expression. Among the most rapidly induced changes are those in genes encoding transcription factors. Promoter regions of transiently induced genes contained DNA motifs that bind auxin response (ARFAT) and silence element binding factors whereas genes induced by IAA during the entire experimental period contained MYC and ARFAT DNA motifs at higher frequencies. Six structurally diverse auxins were analyzed to determine genes that are unique to a specific auxin, as well as a common set of genes that are rapidly regulated by all tested auxins, thus enabling the identification of shared DNA motifs. In addition to ARFAT, analysis of promoter regions of genes induced by all six auxins revealed the presence of an abscisic-acid-responsive DC3 promoter-binding factor and low temperature responsive elements suggesting a possible role for abscisic acid in modulating auxin-induced responses. © Springer-Verlag 2004.

引用

页码：135 / 143

页数：8

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