Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22–27, 2010

被引:7
作者
Jack A. Gilbert
Folker Meyer
Rob Knight
Dawn Field
Nikos Kyrpides
Pelin Yilmaz
John Wooley
机构
[1] Argonne National Laboratory,Department of Ecology and Evolution
[2] University of Chicago,Computation Institute
[3] University of Chicago,Department of Chemistry and Biochemistry
[4] University of Colorado,Microbial Genomics Group
[5] NERC Centre for Ecology & Hydrology,undefined
[6] DOE Joint Genome Institute,undefined
[7] Max Planck Institute for Marine Microbiology,undefined
[8] University of California San Diego,undefined
关键词
Phylogenetic Diversity; Wellcome Trust Sanger Institute; Genomic Standard Consortium; Roundtable Discussion; Earth Microbiome Project;
D O I
10.4056/sigs.1333437
中图分类号
学科分类号
摘要
This report summarizes the proceedings of the Metagenomics, Metadata, Metaanalysis, Models and Metainfrastructure (M5) Roundtable at the 13th International Society for Microbial Ecology Meeting in Seattle, WA, USA August 22–27, 2010. The Genomic Standards Consortium (GSC) hosted this meeting as a community engagement exercise to describe the GSC to the microbial ecology community during this important international meeting. The roundtable included five talks given by members of the GSC, and was followed by audience participation in the form of a roundtable discussion. This report summarizes this event. Further information on the GSC and its range of activities can be found at http://www.gensc.org.
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页码:235 / 239
页数:4
相关论文
共 72 条
[1]  
Hugenholtz P(2009)A changing of the guard Environ Microbiol 11 551-553
[2]  
Kyrpides NC(2005)The microbial pan-genome Curr Opin Genet Dev 15 589-594
[3]  
Medini D(2008)The minimum information about a genome sequence (MIGS) specification Nat Biotechnol 26 541-547
[4]  
Donati C(2010)The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata Nucleic Acids Res 38 D346-D354
[5]  
Tettelin H(2008)The metagenomics RAST server — a public resource for the automatic phylogenetic and functional analysis of metagenomes BMC Bioinformatics 9 386-121
[6]  
Masignani V(2008)A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML) OMICS 12 115-127
[7]  
Rappuoli R(2008)Laying the foundation for a Genomic Rosetta Stone: creating information hubs through the use of consensus identifiers OMICS 12 123-136
[8]  
Field D(2008)Habitat-Lite: a GSC case study based on free text terms for environmental metadata OMICS 12 129-D390
[9]  
Garrity G(2010)The integrated microbial genomes system: an expanding comparative analysis resource Nucleic Acids Res 38 D382-undefined
[10]  
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