PEPTIDE MODELS .3. CONFORMATIONAL POTENTIAL-ENERGY HYPERSURFACE OF FORMYL-L-VALINAMIDE

被引:71
作者
VIVIANI, W
RIVAIL, JL
PERCZEL, A
CSIZMADIA, IG
机构
[1] UNIV NANCY 1, CHIM THEOR LAB, CNRS, UA 510, BP 239, F-54506 VANDOEUVRE LES NANCY, FRANCE
[2] EOTVOS LORAND UNIV, INST CHEM, DEPT ORGAN CHEM, H-1364 BUDAPEST 5, HUNGARY
[3] UNIV TORONTO, DEPT CHEM, TORONTO M5S 1A1, ONTARIO, CANADA
关键词
D O I
10.1021/ja00071a046
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Out of the 27 legitimate minima of the 3D Ramachandran map, E = E(phi,psi,chi1), the existing 20 conformations of formyl-L-valinamide have been determined by ab-initio SCF-MO computations. In the gauche side-chain conformations (chi1 = 60-degrees and chi1 = 300-degrees), the pattern of minima on the backbone potential energy surface, i.e. on the 2D Ramachandran map, E = E(phi,psi), is equivalent to the backbone conformation of the corresponding L-alanine derivative, which shows the absence of the alpha(L) and epsilon(L) conformations. However, in the anti conformation (chi1 = 180-degrees) an additional backbone conformation, the one labeled as delta(L), has disappeared. This implied that, at the chi1 = 180-degrees torsional angle, on the E = E(chi1) potential curve crosssection, the delta(L) conformation is destabilized to such a degree that the delta(L) minimum is replaced by a higher indexed critical point (lambda = 1) on the potential energy hypersurface of 3N-6 independent variables. The beta(L) backbone conformation is also destabilized at chi1 = 180-degrees to a higher energy than either of the two nonequivalent gauche conformations; nevertheless, it remained a minimum. In contrast to the above, three backbone conformations (gamma(L), gamma(D), and alpha(D)) are stabilized in the anti (chi1 = 180-degrees) side-chain conformation with respect to the two nonequivalent gauche conformations. A new method has been developed for a unique energy partitioning in order to quantify the magnitude of the side chain/backbone interaction. The numerical values for such side chain/backbone interactions have been calculated for the (i)Pr group in the various backbone conformations of formyl-L-valinamide relative to that of hydrogen in the corresponding backbone conformations of formylglycinamide. The computations have clearly shown that even an apolar side chain was able to interact with the peptide backbone so drastically that it could annihilate one of the otherwise legitimate minima through an unfavorable backbone and side-chain torsional angles combination.
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页码:8321 / 8329
页数:9
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