1.6-ANGSTROM STRUCTURE OF A SEMISYNTHETIC RIBONUCLEASE CRYSTALLIZED FROM AQUEOUS-ETHANOL - COMPARISON WITH CRYSTALS FROM SALT-SOLUTIONS AND WITH RIBONUCLEASE-A FROM AQUEOUS ALCOHOL-SOLUTIONS

被引:5
作者
DEMEL, SJ
DOSCHER, MS
MARTIN, PD
RODIER, F
EDWARDS, BFP
机构
[1] WAYNE STATE UNIV,SCH MED,DEPT BIOCHEM,DETROIT,MI 48201
[2] CNRS,STRUCT BIOL LAB,F-91198 GIF SUR YVETTE,FRANCE
来源
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY | 1995年 / 51卷
关键词
D O I
10.1107/S0907444995004574
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The non-covalent combination of residues 1-118 of RNase A with a synthetic 14-residue peptide containing residues 111-124 of the molecule forms a highly active semisynthetic enzyme, RNase 1-118:111-124. With this enzyme, the roles played by the six C-terminal residues in generating the catalytic efficiency and substrate specificity of RNase can be studied using chemically synthesized analogs. The structure of RNase 1-118:111-124 from 43% aqueous ethanol has been determined using molecular-replacement methods and refined to a crystallographic R factor of 0.166 for all observed reflections in the range 7.0-1.6 Angstrom (Protein Data Bank file 1SSC). The structure is compared with the 2.0 Angstrom, structure of RNase A from 43% aqueous 2-methyl-2-propanol and with the 1.8 Angstrom structure of the semisynthetic enzyme obtained from crystals grown in concentrated salt solution. The structure of RNase 1-118:111-124 from aqueous ethanol is virtually identical to that of RNase A from aqueous 2-methyl-2-propanol, Half of the crystallographically bound water molecules are not coincident, however. The structure is somewhat less similar to that of RNase 1-118:111-124 from salt solutions, with a major difference being the positioning of active-site residue His 119.
引用
收藏
页码:1003 / 1012
页数:10
相关论文
共 58 条
[1]   NEW LEAST-SQUARES REFINEMENT TECHNIQUE BASED ON FAST FOURIER-TRANSFORM ALGORITHM [J].
AGARWAL, RC .
ACTA CRYSTALLOGRAPHICA SECTION A, 1978, 34 (SEP) :791-809
[2]   MOLECULAR EVOLUTION OF THE RIBONUCLEASE SUPERFAMILY [J].
BEINTEMA, JJ ;
SCHULLER, C ;
IRIE, M ;
CARSANA, A .
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 1988, 51 (03) :165-192
[3]   PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].
BERNSTEIN, FC ;
KOETZLE, TF ;
WILLIAMS, GJB ;
MEYER, EF ;
BRICE, MD ;
RODGERS, JR ;
KENNARD, O ;
SHIMANOUCHI, T ;
TASUMI, M .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542
[4]  
BLACKBURN P, 1982, PANCREATIC RIBONUCLE, V4, P317
[5]   RIBONUCLEASE-A - LEAST-SQUARES REFINEMENT OF THE STRUCTURE AT 1.45 A RESOLUTION [J].
BORKAKOTI, N ;
MOSS, DS ;
PALMER, RA .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1982, 38 (AUG) :2210-2217
[6]   THE REFINED STRUCTURE OF RIBONUCLEASE-A AT 1.45 A RESOLUTION [J].
BORKAKOTI, N ;
MOSS, DS ;
STANFORD, MJ ;
PALMER, RA .
JOURNAL OF CRYSTALLOGRAPHIC AND SPECTROSCOPIC RESEARCH, 1984, 14 (05) :467-494
[7]   ROLE OF ACTIVE-SITE RESIDUES AND SOLVATION IN RNASE-A [J].
BROOKS, C ;
BRUNGER, A ;
FRANCL, M ;
HAYDOCK, K ;
ALLEN, LC ;
KARPLUS, M .
ANNALS OF THE NEW YORK ACADEMY OF SCIENCES, 1986, 471 :295-298
[8]   CRYSTALLOGRAPHIC REFINEMENT BY SIMULATED ANNEALING APPLICATION TO A 2.8-A RESOLUTION STRUCTURE OF ASPARTATE-AMINOTRANSFERASE [J].
BRUNGER, AT .
JOURNAL OF MOLECULAR BIOLOGY, 1988, 203 (03) :803-816
[9]   ACTIVE-SITE DYNAMICS OF RIBONUCLEASE [J].
BRUNGER, AT ;
BROOKS, CL ;
KARPLUS, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1985, 82 (24) :8458-8462
[10]   TOM - A FRODO SUBPACKAGE FOR PROTEIN-LIGAND FITTING WITH INTERACTIVE ENERGY MINIMIZATION [J].
CAMBILLAU, C ;
HORJALES, E .
JOURNAL OF MOLECULAR GRAPHICS, 1987, 5 (04) :174-&