G+C-RICH TRACT IN 5' END OF HUMAN INTRONS

被引:39
作者
ENGELBRECHT, J
KNUDSEN, S
BRUNAK, S
机构
[1] TECH UNIV DENMARK, CTR COMP NEURAL NETWORK, DK-2800 LYNGBY, DENMARK
[2] BOSTON UNIV, MOLEC ENGN RES CTR, BOSTON, MA 02115 USA
关键词
INTRON-SPLICING; HUMAN GENES; EXON CONSENSUS SEQUENCE; NEURAL NETWORK;
D O I
10.1016/0022-2836(92)90685-D
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Analysis of an artificial neural network trained to classify DNA as coding or non-coding revealed compositional differences between sequence parts translated into protein and those that were not. The 5′ end of human introns was found to have a base composition that was non-random to an extent matching the non-randomness in the 3′ end that contains the polypyrimidine tract. The prevailing nucleotides in the initial 50 nucleotides of human introns are guanine and cytosine, the trinucleotide GGG was found to occur almost four times as frequently as it would in sequences with a uniform distribution of the nucleotides. The initial part of terminal exons and their associated terminal introns were shown to have a very special base composition deviating strongly from the normal picture in other exons and introns. © 1992.
引用
收藏
页码:108 / 113
页数:6
相关论文
共 29 条
[1]  
[Anonymous], 1987, LEARNING INTERNAL RE
[2]   PREDICTION OF HUMAN MESSENGER-RNA DONOR AND ACCEPTOR SITES FROM THE DNA-SEQUENCE [J].
BRUNAK, S ;
ENGELBRECHT, J ;
KNUDSEN, S .
JOURNAL OF MOLECULAR BIOLOGY, 1991, 220 (01) :49-65
[3]   NEURAL NETWORK DETECTS ERRORS IN THE ASSIGNMENT OF MESSENGER-RNA SPLICE SITES [J].
BRUNAK, S ;
ENGELBRECHT, J ;
KNUDSEN, S .
NUCLEIC ACIDS RESEARCH, 1990, 18 (16) :4797-4801
[4]   CLEANING UP GENE DATABASES [J].
BRUNAK, S ;
ENGELBRECHT, J ;
KNUDSEN, S .
NATURE, 1990, 343 (6254) :123-123
[5]   RECOGNITION OF PROTEIN CODING REGIONS IN DNA-SEQUENCES [J].
FICKETT, JW .
NUCLEIC ACIDS RESEARCH, 1982, 10 (17) :5303-5318
[6]   FINITE-SAMPLE CORRECTIONS TO ENTROPY AND DIMENSION ESTIMATES [J].
GRASSBERGER, P .
PHYSICS LETTERS A, 1988, 128 (6-7) :369-373
[7]   PRE-MESSENGER-RNA SPLICING [J].
GREEN, MR .
ANNUAL REVIEW OF GENETICS, 1986, 20 :671-708
[8]   MESSENGER-RNA SPLICING IN YEAST - CLUES TO WHY THE SPLICEOSOME IS A RIBONUCLEOPROTEIN [J].
GUTHRIE, C .
SCIENCE, 1991, 253 (5016) :157-163
[9]  
HERTZ GZ, 1990, COMPUT APPL BIOSCI, V6, P81
[10]  
HERZEL H, 1988, SYST ANAL MODEL SIM, V5, P435