Analysis of the phylogenetic placement of different spumaretroviral genes reveals complex pattern of foamy virus evolution

被引：5

作者：

Dias, HW ^{[1
]}

Aboud, M ^{[1
]}

Flugel, RM ^{[1
]}

机构：

[1] DKFZ, FORSCH SCHWERPUNKT ANGEW TUMORVIROL, ABT RETROVIRAL GENEXPRESS, D-69009 HEIDELBERG, GERMANY

来源：

VIRUS GENES | 1995年 / 11卷 / 2-3期

关键词：

foamy virus; spumavirus; retrovirus; Bel genes; pol; nucleocapsid protein; phylogenetic analysis;

D O I：

10.1007/BF01728657

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Foamy or spumaviruses are complex retroviruses. Phylogenetic trees have been constructed previously for either the polymerase or integrase domains showed a clustering of the foamy viruses relatively distant from other retroviruses, The most related retrovirus was found to be murine leukemia virus, irrespective of the method used or foamy viral gene analyzed. We analyze bel genes of different foamy viruses and compared the corresponding phylogenetic trees with those obtained from the pol genes that were constructed with refined computer programs, In addition, the nucleocapsid protein sequence of foamy viruses was used for a comparative phylogenetic analysis. Known biological properties of the individual FV protein domains are discussed, to ascertain the apparent phylogenetic relatedness.

引用

页码：183 / 190

页数：8

共 29 条

[1]

Coffin J. M., 1990, VIROLOGY, P1437

[2] HUMAN-IMMUNODEFICIENCY-VIRUS AS A PROTOTYPIC COMPLEX RETROVIRUS [J].

CULLEN, BR .

JOURNAL OF VIROLOGY, 1991, 65 (03) :1053-1056

[3] SPECIFIC BINDING OF HIV-1 NUCLEOCAPSID PROTEIN TO PSI-RNA IN-VITRO REQUIRES N-TERMINAL ZINC-FINGER AND FLANKING BASIC-AMINO-ACID RESIDUES [J].

DANNULL, J ;

SUROVOY, A ;

JUNG, G ;

MOELLING, K .

EMBO JOURNAL, 1994, 13 (07) :1525-1533

[4]

DOOLITTLE RF, 1990, METHOD ENZYMOL, V183, P659

[5]

FENG DF, 1990, METHOD ENZYMOL, V183, P375

[6] NUCLEOTIDE-SEQUENCE ANALYSIS OF THE ENV GENE AND ITS FLANKING REGIONS OF THE HUMAN SPUMARETROVIRUS REVEALS 2 NOVEL GENES [J].

FLUGEL, RM ;

RETHWILM, A ;

MAURER, B ;

DARAI, G .

EMBO JOURNAL, 1987, 6 (07) :2077-2084

[7] GENOME ORGANIZATION AND TRANSACTIVATION OF THE HUMAN-IMMUNODEFICIENCY-VIRUS TYPE-2 [J].

GUYADER, M ;

EMERMAN, M ;

SONIGO, P ;

CLAVEL, F ;

MONTAGNIER, L ;

ALIZON, M .

NATURE, 1987, 326 (6114) :662-669

[8] ISOLATION, CLONING, AND SEQUENCING OF SIMIAN FOAMY VIRUSES FROM CHIMPANZEES (SFVCPZ) - HIGH HOMOLOGY TO HUMAN FOAMY VIRUS (HRV) [J].

HERCHENRODER, O ;

RENNE, R ;

LONCAR, D ;

COBB, EK ;

MURTHY, KK ;

SCHNEIDER, J ;

MERGIA, A ;

LUCIW, PA .

VIROLOGY, 1994, 201 (02) :187-199

[9] CRYSTAL-STRUCTURE OF HUMAN-IMMUNODEFICIENCY-VIRUS TYPE-1 REVERSE-TRANSCRIPTASE COMPLEXED WITH DOUBLE-STRANDED DNA AT 3.0 ANGSTROM RESOLUTION SHOWS BENT DNA [J].

JACOBOMOLINA, A ;

DING, JP ;

NANNI, RG ;

CLARK, AD ;

LU, XD ;

TANTILLO, C ;

WILLIAMS, RL ;

KAMER, G ;

FERRIS, AL ;

CLARK, P ;

HIZI, A ;

HUGHES, SH ;

ARNOLD, E .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (13) :6320-6324

[10] MUTATIONAL ANALYSIS OF THE REVERSE-TRANSCRIPTASE AND RIBONUCLEASE-H DOMAINS OF THE HUMAN FOAMY VIRUS [J].

KOGEL, D ;

ABOUD, M ;

FLUGEL, RM .

NUCLEIC ACIDS RESEARCH, 1995, 23 (14) :2621-2625

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