IDENTIFICATION AND ACTIVITY OF 2 INSERTION-SEQUENCE ELEMENTS IN RHODOCOCCUS SP STRAIN IGTS8

被引:19
作者
DENOME, SA [1 ]
YOUNG, KD [1 ]
机构
[1] UNIV N DAKOTA,SCH MED,DEPT MICROBIOL & IMMUNOL,GRAND FORKS,ND 58202
关键词
TRANSPOSON; IS6120; IST2; IS1166; IS1295; INVERTED REPEAT; MYCOBACTERIA;
D O I
10.1016/0378-1119(95)00241-W
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Two putative insertion sequence (IS) elements, IS1166 and IS1295, were identified on a plasmid present in Rhodococcus sp. IGTS8. Four copies of IS1166 were present in strain IGTS8: one copy on each of two separate plasmids and two copies on a third plasmid or in the chromosome. Of eight rhodococci tested, only R. zopfii contained a copy of an IS1166-like element. Two mutants of strain IGTS8 were isolated in which an additional copy of IS1166 was present, suggesting that at least one copy of this element may be able to transpose. IS1166 and IS1295 are new members of a family of IS elements which includes IS6120 from Mycobacterium smegmatis, IST2 from Thiobacillus ferrooxidans, IS256 from Staphylococcus aureus and ISRm3 from Rhizobium meliloti. The 24-25-bp inverted repeats of these six elements are highly similar and, with the exception of IS1295, their transposases exhibit moderate identities. In particular, the predicted amino-acid sequence of the transposase from IS1166 is 86% identical to that from the known transposable element IS6120.
引用
收藏
页码:33 / 38
页数:6
相关论文
共 18 条
[1]   CHARACTERIZATION OF THE DESULFURIZATION GENES FROM RHODOCOCCUS SP STRAIN IGTS8 [J].
DENOME, SA ;
OLDFIELD, C ;
NASH, LJ ;
YOUNG, KD .
JOURNAL OF BACTERIOLOGY, 1994, 176 (21) :6707-6716
[2]   IDENTIFICATION AND CLONING OF GENES INVOLVED IN SPECIFIC DESULFURIZATION OF DIBENZOTHIOPHENE BY RHODOCOCCUS SP STRAIN IGTS8 [J].
DENOME, SA ;
OLSON, ES ;
YOUNG, KD .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1993, 59 (09) :2837-2843
[3]  
FEINBERG AP, 1984, ANAL BIOCHEM, V137, P266
[4]   POLAR MUTATIONS IN LAC, GAL AND PHAGE LAMBDA CONSIST OF A FEW IS-DNA SEQUENCES INSERTED WITH EITHER ORIENTATION [J].
FIANDT, M ;
SZYBALSKI, W ;
MALAMY, MH .
MOLECULAR AND GENERAL GENETICS, 1972, 119 (03) :223-231
[5]   THE BIOLOGY AND GENETICS OF THE GENUS RHODOCOCCUS [J].
FINNERTY, WR .
ANNUAL REVIEW OF MICROBIOLOGY, 1992, 46 :193-218
[6]   ISOLATION AND ANALYSIS OF IS6120, A NEW INSERTION-SEQUENCE FROM MYCOBACTERIUM-SMEGMATIS [J].
GUILHOT, C ;
GICQUEL, B ;
DAVIES, J ;
MARTIN, C .
MOLECULAR MICROBIOLOGY, 1992, 6 (01) :107-113
[7]   UNIDIRECTIONAL DIGESTION WITH EXONUCLEASE-III CREATES TARGETED BREAKPOINTS FOR DNA SEQUENCING [J].
HENIKOFF, S .
GENE, 1984, 28 (03) :351-359
[8]  
JAGER W, 1995, FEMS MICROBIOL LETT, V126, P1
[9]  
KILBANE JJ, 1990, 1990 P 1ST INT S BIO
[10]   RAPID AND SENSITIVE PROTEIN SIMILARITY SEARCHES [J].
LIPMAN, DJ ;
PEARSON, WR .
SCIENCE, 1985, 227 (4693) :1435-1441