FORWARD-BACKWARD NONLINEAR FILTERING TECHNIQUE FOR EXTRACTING SMALL BIOLOGICAL SIGNALS FROM NOISE

被引:151
作者
CHUNG, SH
KENNEDY, RA
机构
[1] AUSTRALIAN NATL UNIV, RES SCH PHYS SCI & ENGN, DEPT SYST ENGN, CANBERRA, ACT 2601, AUSTRALIA
[2] AUSTRALIAN NATL UNIV, FAC SCI, INTERDISCIPLINARY ENGN PROGRAM, CANBERRA, ACT 2601, AUSTRALIA
基金
澳大利亚研究理事会; 英国医学研究理事会;
关键词
DIGITAL SIGNAL PROCESSING; NONLINEAR FILTERING; NOISE REDUCTION; SIGNAL EXTRACTION; ION CHANNELS; PATCH CLAMP; CHANNEL CURRENTS; POSTSYNAPTIC CURRENTS;
D O I
10.1016/0165-0270(91)90118-J
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A novel and computationally efficient, non-linear signal processing technique for reducing background noise to reveal small biological signals is described. The signal estimate is formed by weighting the outputs of a set of causal (forward) and anti-causal (backward) predictors. The weights used to combine the predictors are adaptively determined at each data point to reflect the performance of the respective predictor within a short analysis window. The method is specifically designed for revealing fast transient signals dominated by noise, such as single-channel or post-synaptic currents. Markovian and exponentially decaying signals embedded in the amplifier noise were extracted using this method and compared with the original signals. The results of such simulations demonstrate the advantage of this non-linear method over low-pass filtering. Brief pulses imbedded in a broad-band amplifier noise can be reliably recovered using our non-linear filtering technique. Moreover, the kinetics of a single channel and the time constant of exponentially decaying signals can be measured with acceptable accuracy even when the signals are dominated by noise.
引用
收藏
页码:71 / 86
页数:16
相关论文
共 12 条
[1]  
[Anonymous], 1979, OPTIMAL FILTERING
[2]   AGGREGATED MARKOV-PROCESSES INCORPORATING TIME INTERVAL OMISSION [J].
BALL, F ;
SANSOM, M .
ADVANCES IN APPLIED PROBABILITY, 1988, 20 (03) :546-572
[3]  
Childers D., 1987, MODERN SPECTRUM ANAL
[4]   CHARACTERIZATION OF SINGLE CHANNEL CURRENTS USING DIGITAL SIGNAL-PROCESSING TECHNIQUES BASED ON HIDDEN MARKOV-MODELS [J].
CHUNG, SH ;
MOORE, JB ;
XIA, L ;
PREMKUMAR, LS ;
GAGE, PW .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1990, 329 (1254) :265-285
[5]  
Colquhoun D., 1983, SINGLE CHANNEL RECOR, Vsecond, P191
[6]   YET ANOTHER APPROACH TO THE DWELL-TIME OMISSION PROBLEM OF SINGLE-CHANNEL ANALYSIS [J].
CROUZY, SC ;
SIGWORTH, FJ .
BIOPHYSICAL JOURNAL, 1990, 58 (03) :731-743
[7]   VITERBI ALGORITHM [J].
FORNEY, GD .
PROCEEDINGS OF THE IEEE, 1973, 61 (03) :268-278
[8]   CORRELATION-FUNCTIONS OF A FUNCTION OF A FINITE-STATE MARKOV PROCESS WITH APPLICATION TO CHANNEL KINETICS [J].
FREDKIN, DR ;
RICE, JA .
MATHEMATICAL BIOSCIENCES, 1987, 87 (02) :161-172
[9]   THE DISTRIBUTIONS OF THE APPARENT OPEN TIMES AND SHUT TIMES IN A SINGLE CHANNEL RECORD WHEN BRIEF EVENTS CANNOT BE DETECTED [J].
HAWKES, AG ;
JALALI, A ;
COLQUHOUN, D .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 1990, 332 (1627) :511-538
[10]  
NIEDZWIECKI M, 1990, SIGNAL PROCESS, V5, P133