PROSET - A FAST PROCEDURE TO CREATE NONREDUNDANT SETS OF PROTEIN SEQUENCES

被引：29

作者：

BRENDEL, V

机构：

[1] Department of Mathematics Stanford University, Stanford

来源：

MATHEMATICAL AND COMPUTER MODELLING | 1992年 / 16卷 / 6-7期

关键词：

D O I：

10.1016/0895-7177(92)90150-J

中图分类号：

TP39 [计算机的应用];

学科分类号：

081203 ; 0835 ;

摘要：

The PROSET computer program described efficiently eliminates redundant entries from a set of proteins. It finds repeats between all the proteins of the original set, derives a block identity score between any two sequences that share at least one sufficiently long exact repeat, and discards the shorter of the two sequences if the score exceeds a user-defined threshold. The program finds application in generating control sets for statistical evaluation of sequence patterns. It may also serve to reduce the amount of redundancy in available databases.

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页码：37 / 43

页数：7

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