MINIMUM ENERGY COMPACT STRUCTURES OF RANDOM SEQUENCES OF HETEROPOLYMERS

被引:127
作者
CAMACHO, CJ
THIRUMALAI, D
机构
[1] Institute for Physical Science and Technology, University of Maryland, College Park
关键词
D O I
10.1103/PhysRevLett.71.2505
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
We enumerate the number of minimum energy compact structures (MECS) for a two dimensional heteropolymer model consisting of hydrophobic (H) and hydrophilic beads averaged over all possible sequences as a function of the total number of beads N and the number of H beads N(H). The analysis of the average number of compact structures, which grows exponentially with N, gives no indication of logarithmic corrections to the free energy. For intermediate values of the ratio N(H)/N, we estimate that the average number of MECS-which has a minimum at N(H)min/N=0.6 +/- 0.1-does not grow with N. Our results suggest that the late stages of protein folding should be restricted to the sampling of MECS only.
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页码:2505 / 2508
页数:4
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