THE DISCON ALGORITHM, AN ACCURATE AND ROBUST ALTERNATIVE TO AN EIGENVALUE SOLUTION FOR EXTRACTING EXPERIMENTAL DISTANCES FROM NOESY DATA

被引:18
作者
LAI, XN [1 ]
CHEN, CP [1 ]
ANDERSEN, NH [1 ]
机构
[1] UNIV WASHINGTON,DEPT CHEM,SEATTLE,WA 98195
来源
JOURNAL OF MAGNETIC RESONANCE SERIES B | 1993年 / 101卷 / 03期
关键词
D O I
10.1006/jmrb.1993.1043
中图分类号
O64 [物理化学(理论化学)、化学物理学]; O56 [分子物理学、原子物理学];
学科分类号
070203 ; 070304 ; 081704 ; 1406 ;
摘要
The DISCON algorithm is a novel, computationally direct, iterative solution for cross-relaxation rates that can be applied to a single NOESY data set without prior knowledge of the applicable motional regime or a structural model. Tests with simulated NOESY data demonstrate that it is less subject to error propagation from incorrect autopeak values than an eigenvalue solution. The resulting cross rates are fully corrected for secondary NOE contributions. The algorithm has been incorporated into a software suite that provides distance estimates and their experimental precision from raw NOESY data. Missing values in the data matrix are approximated as class averages of existing data rather than calculated values based on a starting conformational model; thus, more accurate initial distance estimates for modeling can be derived without a starting model bias. The accuracy of the program is demonstrated using NOESY data for a rigid steroid, Its application for conformational analysis is illustrated with a flexible prostaglandin analog. © 1993 Academic Press, Inc.
引用
收藏
页码:271 / 288
页数:18
相关论文
共 50 条
[1]   CONFORMATIONAL ISOMERISM OF ENDOTHELIN IN ACIDIC AQUEOUS-MEDIA - A QUANTITATIVE NOESY ANALYSIS [J].
ANDERSEN, NH ;
CHEN, CP ;
MARSCHNER, TM ;
KRYSTEK, SR ;
BASSOLINO, DA .
BIOCHEMISTRY, 1992, 31 (05) :1280-1295
[2]   RAPID ACQUISITION OF NOE DIFFERENCE SPECTRA - THE RELATIVE MERITS OF TRANSIENT VERSUS DRIVEN EXPERIMENTAL PROTOCOLS [J].
ANDERSEN, NH ;
NGUYEN, KT ;
HARTZELL, CJ ;
EATON, HL .
JOURNAL OF MAGNETIC RESONANCE, 1987, 74 (02) :195-211
[3]   SMALL MOLECULE CONFORMATION IN THE RECEPTOR-BOUND STATE BY THE TWO-DIMENSIONAL SPIN EXCHANGE EXPERIMENT [J].
ANDERSEN, NH ;
EATON, HL ;
NGUYEN, KT .
MAGNETIC RESONANCE IN CHEMISTRY, 1987, 25 (12) :1025-1034
[4]   QUANTITATIVE SMALL MOLECULE NOESY - A PRACTICAL GUIDE FOR DERIVATION OF CROSS-RELAXATION RATES AND INTERNUCLEAR DISTANCES [J].
ANDERSEN, NH ;
EATON, HL ;
LAI, X .
MAGNETIC RESONANCE IN CHEMISTRY, 1989, 27 (06) :515-528
[5]  
ANDERSEN NH, 1990, NMR APPLICATIONS BIO, P95
[6]   DISTANCE MEASUREMENT AND STRUCTURE REFINEMENT WITH NOE DATA [J].
BALEJA, JD ;
MOULT, J ;
SYKES, BD .
JOURNAL OF MAGNETIC RESONANCE, 1990, 87 (02) :375-384
[7]   3-DIMENSIONAL SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING THE BCLI RESTRICTION SEQUENCE - TWO-DIMENSIONAL NMR-STUDIES, DISTANCE GEOMETRY CALCULATIONS, AND REFINEMENT BY BACK-CALCULATION OF THE NOESY SPECTRUM [J].
BANKS, KM ;
HARE, DR ;
REID, BR .
BIOCHEMISTRY, 1989, 28 (17) :6996-7010
[8]   ITERATIVE PROCEDURE FOR STRUCTURE DETERMINATION FROM PROTON PROTON NOES USING A FULL RELAXATION MATRIX APPROACH - APPLICATION TO A DNA OCTAMER [J].
BOELENS, R ;
KONING, TMG ;
VANDERMAREL, GA ;
VANBOOM, JH ;
KAPTEIN, R .
JOURNAL OF MAGNETIC RESONANCE, 1989, 82 (02) :290-308
[9]   DETERMINATION OF BIOMOLECULAR STRUCTURES FROM PROTON-PROTON NOES USING A RELAXATION MATRIX APPROACH [J].
BOELENS, R ;
KONING, TMG ;
KAPTEIN, R .
JOURNAL OF MOLECULAR STRUCTURE, 1988, 173 :299-311
[10]   COMATOSE, A METHOD FOR CONSTRAINED REFINEMENT OF MACROMOLECULAR STRUCTURE BASED ON TWO-DIMENSIONAL NUCLEAR OVERHAUSER EFFECT SPECTRA [J].
BORGIAS, BA ;
JAMES, TL .
JOURNAL OF MAGNETIC RESONANCE, 1988, 79 (03) :493-512