THE MYCOBACTERIUM-LEPRAE GENOME - SYSTEMATIC SEQUENCE-ANALYSIS IDENTIFIES KEY CATABOLIC ENZYMES, ATP-DEPENDENT TRANSPORT-SYSTEMS AND A NOVEL POLA LOCUS ASSOCIATED WITH GENOMIC VARIABILITY

被引:36
作者
FSIHI, H [1 ]
COLE, ST [1 ]
机构
[1] INST PASTEUR, UNITE GENET MOLEC BACTERIENNE, F-75724 PARIS 15, FRANCE
关键词
D O I
10.1111/j.1365-2958.1995.tb02317.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In the framework of the mycobacterial genome sequencing project, a continuous 37 049 bp sequence from the Mycobacterium leprae chromosome has been determined, Computer analysis revealed 10 complete open reading frames, and nine of their products show similarity to known proteins, Seven of these were identified as the enzyme isocitrate lyase, two P-type ATPase cation transporters, two AMP-binding proteins, the ribosomal protein S1, and DNA polymerase I, Interestingly, the polA gene, encoding DNA polymerase, is flanked by two inverted copies of a new class of the M. leprae specific repetitive sequence, RLEP, and this structure resembles a transposable element, A second copy of this element was found at another locus in the genome, but the two copies were not present in equal amounts and could not be found in all isolates of M. leprae, This is the first evidence for genomic variability in the leprosy bacillus and might ultimately be useful for developing a molecular test capable of distinguishing between strains of M. leprae.
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收藏
页码:909 / 919
页数:11
相关论文
共 37 条
[1]   THE URAA LOCUS AND HOMOLOGOUS RECOMBINATION IN MYCOBACTERIUM-BOVIS BCG [J].
ALDOVINI, A ;
HUSSON, RN ;
YOUNG, RA .
JOURNAL OF BACTERIOLOGY, 1993, 175 (22) :7282-7289
[2]   ISSUES IN SEARCHING MOLECULAR SEQUENCE DATABASES [J].
ALTSCHUL, SF ;
BOGUSKI, MS ;
GISH, W ;
WOOTTON, JC .
NATURE GENETICS, 1994, 6 (02) :119-129
[3]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[4]   PROSITE - A DICTIONARY OF SITES AND PATTERNS IN PROTEINS [J].
BAIROCH, A .
NUCLEIC ACIDS RESEARCH, 1992, 20 :2013-2018
[5]  
COLE ST, 1994, INT J LEPROSY, V62, P122
[6]  
Dear S, 1992, DNA Seq, V3, P107, DOI 10.3109/10425179209034003
[7]  
DEAR S, 1991, NUCLEIC ACIDS RES, V19, P6481
[8]   MYCOBACTERIUM-LEPRAE ISOLATES FROM DIFFERENT SOURCES HAVE IDENTICAL SEQUENCES OF THE SPACER REGION BETWEEN THE 16S AND 23S RIBOSOMAL-RNA GENES [J].
DEWIT, MYL ;
KLATSER, PR .
MICROBIOLOGY-UK, 1994, 140 :1983-1987
[9]   A MYCOBACTERIUM LEPRAE-SPECIFIC GENE ENCODING AN IMMUNOLOGICALLY RECOGNIZED 45 KDA PROTEIN [J].
DEWIT, TFR ;
CLARKCURTISS, JE ;
ABEBE, F ;
KOLK, AHJ ;
JANSON, AAM ;
VANAGTERVELD, M ;
THOLE, JER .
MOLECULAR MICROBIOLOGY, 1993, 10 (04) :829-838
[10]   SITE-DIRECTED MUTAGENESIS OF LYSINE 193 IN ESCHERICHIA-COLI ISOCITRATE LYASE BY USE OF UNIQUE RESTRICTION ENZYME SITE ELIMINATION [J].
DIEHL, P ;
MCFADDEN, BA .
JOURNAL OF BACTERIOLOGY, 1993, 175 (08) :2263-2270