PROPERTIES OF A GENERAL-MODEL OF DNA EVOLUTION UNDER NO-STRAND-BIAS CONDITIONS

被引:136
作者
LOBRY, JR
机构
[1] Laboratoire de Biométrie, CNRS URA 243, Université Claude Bernard, Villeurbanne, F-69622
关键词
DNA EVOLUTION; NO-STRAND BIAS; CODING SEQUENCE;
D O I
10.1007/BF00163237
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Under the hypothesis of no-strand-bias conditions, the Watson and Crick base-pairing rule decreases the complexity of models of DNA evolution by reducing to six the maximum number of substitution rates. It was shown that intrastrand equimolarity between A and T (A* T*) and between G and C (G* C*) is a general asymptotic property of this class of models. This statistical prediction was observed on 60 long genomic fragments (>50 kbp) from various kingdoms, even when the effect of the two opposite orientations for coding sequences is removed. The practical consequence of the model for estimating the expected number of substitutions per site between two homologous DNA sequences is discussed.
引用
收藏
页码:326 / 330
页数:5
相关论文
共 12 条
[1]  
CHARGAFF E, 1979, ANN NY ACAD SCI, V325, P345
[2]   EVIDENCE OF COMMON REGULARITIES IN THE COMPOSITION OF PENTOSE NUCLEIC ACIDS [J].
ELSON, D ;
CHARGAFF, E .
BIOCHIMICA ET BIOPHYSICA ACTA, 1955, 17 (03) :367-376
[3]  
FOSTER D M, 1975, Mathematical Biosciences, V26, P89, DOI 10.1016/0025-5564(75)90096-6
[4]   QUALITATIVE THEORY OF COMPARTMENTAL-SYSTEMS [J].
JACQUEZ, JA ;
SIMON, CP .
SIAM REVIEW, 1993, 35 (01) :43-79
[5]   NONRANDOMNESS OF POINT MUTATION AS REFLECTED IN NUCLEOTIDE SUBSTITUTIONS IN PSEUDOGENES AND ITS EVOLUTIONARY IMPLICATIONS [J].
LI, WH ;
WU, CI ;
LUO, CC .
JOURNAL OF MOLECULAR EVOLUTION, 1984, 21 (01) :58-71
[6]   SYMMETRY OBSERVATIONS IN LONG NUCLEOTIDE-SEQUENCES [J].
PRABHU, VV .
NUCLEIC ACIDS RESEARCH, 1993, 21 (12) :2797-2800
[7]   SEPARATION OF B SUBTILIS DNA INTO COMPLEMENTARY STRANDS .3. DIRECT ANALYSIS [J].
RUDNER, R ;
KARKAS, JD ;
CHARGAFF, E .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1968, 60 (03) :921-&
[8]   DIRECTIONAL MUTATION PRESSURE, MUTATOR MUTATIONS, AND DYNAMICS OF MOLECULAR EVOLUTION [J].
SUEOKA, N .
JOURNAL OF MOLECULAR EVOLUTION, 1993, 37 (02) :137-153
[9]   INTRASTRAND PARITY RULES OF DNA-BASE COMPOSITION AND USAGE BIASES OF SYNONYMOUS CODONS [J].
SUEOKA, N .
JOURNAL OF MOLECULAR EVOLUTION, 1995, 40 (03) :318-325
[10]   MOLECULAR STRUCTURE OF NUCLEIC ACIDS - A STRUCTURE FOR DEOXYRIBOSE NUCLEIC ACID [J].
WATSON, JD ;
CRICK, FHC .
NATURE, 1953, 171 (4356) :737-738