A RANDOM SEQUENCING APPROACH FOR PLACING MARKERS ON THE PHYSICAL MAP OF MYCOPLASMA-GENITALIUM

被引:13
作者
PETERSON, SN
SCHRAMM, N
HU, PC
BOTT, KF
HUTCHISON, CA
机构
[1] UNIV N CAROLINA, DEPT MICROBIOL & IMMUNOL, CHAPEL HILL, NC 27599 USA
[2] UNIV N CAROLINA, DEPT PEDIAT & INFECT DIS, CHAPEL HILL, NC 27599 USA
关键词
D O I
10.1093/nar/19.21.6027
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A physical map of the Mycoplasma genitalium genome has been prepared using pulsed-field gel electrophoresis (1). This report details recent efforts made to add markers or specific loci to this map in the absence of any mutants or system of genetic exchange. A total of 44 random clones were partially sequenced. Computer analysis was performed in an attempt to identify homologies with genes already recorded in the DNA sequence database. Clones with a large extent of homology to genes from other microorganisms have been assigned to specific loci on the M. genitalium map by hybridization to selected restriction digests. The additional data has facilitated an updated version of the physical map, and verified this random sequencing method as a useful mapping procedure as well as offering new insight into the physiological processes of this fastidious organism.
引用
收藏
页码:6027 / 6031
页数:5
相关论文
共 32 条
[1]   MYCOPLASMAS (MOLLICUTES) HAVE A LOW NUMBER OF RIBOSOMAL-RNA GENES [J].
AMIKAM, D ;
GLASER, G ;
RAZIN, S .
JOURNAL OF BACTERIOLOGY, 1984, 158 (01) :376-378
[2]   UV SURVIVAL OF HUMAN MYCOPLASMAS - EVIDENCE OF DARK REACTIVATION IN MYCOPLASMA-BUCCALE [J].
AOKI, S ;
ITO, S ;
WATANABE, T .
MICROBIOLOGY AND IMMUNOLOGY, 1979, 23 (03) :147-158
[3]   SEPARATION OF LARGE DNA-MOLECULES BY CONTOUR-CLAMPED HOMOGENEOUS ELECTRIC-FIELDS [J].
CHU, G ;
VOLLRATH, D ;
DAVIS, RW .
SCIENCE, 1986, 234 (4783) :1582-1585
[4]   A PHYSICAL MAP OF THE MYCOPLASMA-GENITALIUM GENOME [J].
COLMAN, SD ;
HU, PC ;
LITAKER, W ;
BOTT, KF .
MOLECULAR MICROBIOLOGY, 1990, 4 (04) :683-687
[5]   PREVALENCE OF NOVEL REPEAT SEQUENCES IN AND AROUND THE P1 OPERON IN THE GENOME OF MYCOPLASMA-PNEUMONIAE [J].
COLMAN, SD ;
HU, PC ;
BOTT, KF .
GENE, 1990, 87 (01) :91-96
[6]   HOST-CELL AND UV REACTIVATION OF ULTRAVIOLET-IRRADIATED MYCOPLASMA VIRUSES [J].
DAS, J ;
NOWAK, JA ;
MANILOFF, J .
JOURNAL OF BACTERIOLOGY, 1977, 129 (03) :1424-1427
[7]   A COMPREHENSIVE SET OF SEQUENCE-ANALYSIS PROGRAMS FOR THE VAX [J].
DEVEREUX, J ;
HAEBERLI, P ;
SMITHIES, O .
NUCLEIC ACIDS RESEARCH, 1984, 12 (01) :387-395
[8]   LACK OF REPAIR OF ULTRAVIOLET-LIGHT DAMAGE IN MYCOPLASMA-GALLISEPTICUM [J].
GHOSH, A ;
DAS, J ;
MANILOFF, J .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 116 (02) :337-344
[9]  
HAYFLICK L, 1965, TEX REP BIOL MED, VS 23, P285
[10]  
HUTCHISON CA, 1991, METHOD ENZYMOL, V202, P356