A MOLECULAR-DYNAMICS SIMULATION OF DOUBLE-HELICAL B-DNA INCLUDING COUNTERIONS AND WATER

被引：135

作者：

SEIBEL, GL

SINGH, UC

KOLLMAN, PA

机构：

来源：

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA | 1985年 / 82卷 / 19期

关键词：

D O I：

10.1073/pnas.82.19.6537

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

引用

页码：6537 / 6540

页数：4

共 14 条

[1] MONTE-CARLO SIMULATIONS OF THE SOLVATION OF THE DIMETHYL-PHOSPHATE ANION [J].

ALAGONA, G ;

GHIO, C ;

KOLLMAN, PA .

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1985, 107 (08) :2229-2239

[2]

Arnott S., 1976, HDB BIOCHEMISTRY MOL, VII, P411

[3] BETA-DNA STRUCTURAL DETERMINATION OF NA+ COUNTERIONS AT DIFFERENT HUMIDITIES, IONIC CONCENTRATIONS, AND TEMPERATURES [J].

CLEMENTI, E ;

CORONGIU, G .

INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 1982, 22 (03) :595-630

[4] GENERAL DEFINITION OF RING PUCKERING COORDINATES [J].

CREMER, D ;

POPLE, JA .

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1975, 97 (06) :1354-1358

[5] STRUCTURE OF A B-DNA DODECAMER - CONFORMATION AND DYNAMICS .1. [J].

DREW, HR ;

WING, RM ;

TAKANO, T ;

BROKA, C ;

TANAKA, S ;

ITAKURA, K ;

DICKERSON, RE .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1981, 78 (04) :2179-2183

[6] COMPARISON OF SIMPLE POTENTIAL FUNCTIONS FOR SIMULATING LIQUID WATER [J].

JORGENSEN, WL ;

CHANDRASEKHAR, J ;

MADURA, JD ;

IMPEY, RW ;

KLEIN, ML .

JOURNAL OF CHEMICAL PHYSICS, 1983, 79 (02) :926-935

[7] ORDERED WATER-STRUCTURE AROUND A BETA-DNA DODECAMER - A QUANTITATIVE STUDY [J].

KOPKA, ML ;

FRATINI, AV ;

DREW, HR ;

DICKERSON, RE .

JOURNAL OF MOLECULAR BIOLOGY, 1983, 163 (01) :129-146

[8] STRUCTURE OF HYDRATED NA+ IONS AROUND A REGION OF A-DNA OR B-DNA HELIX [J].

LEE, WK ;

GAO, Y ;

PROHOFSKY, EW .

BIOPOLYMERS, 1984, 23 (02) :257-270

[9]

LEVITT M, 1983, COLD SPRING HARB SYM, V47, P271

[10] PROTON NMR-STUDIES ON THE COVALENTLY LINKED RNA-DNA HYBRID R(GCG)D(TATACGC) - ASSIGNMENT OF PROTON RESONANCES BY APPLICATION OF THE NUCLEAR OVERHAUSER EFFECT [J].

MELLEMA, JR ;

HAASNOOT, CAG ;

VANDERMAREL, GA ;

WILLE, G ;

VANBOECKEL, CAA ;

VANBOOM, JH ;

ALTONA, C .

NUCLEIC ACIDS RESEARCH, 1983, 11 (16) :5717-5738

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